#! /bin/bash

yum install -y libtiff-devel
yum install -y MySQL-python python-devel python2-pip python2-setuptools python2-virtualenv numpy scipy h5py python2-pyyaml python2-pydot python2-matplotlib mysql-connector-python openblas
yum install -y openmpi openmpi-devel

# upgrade pip
pip --no-cache-dir install --upgrade pip

# extra pre-requisites
#pip --no-cache-dir install \
#    scipy decorator

# conflicting packages
rpm -e scipy pyparsing python2-pydot python-matplotlib python2-matplotlib

# install dependencies from python packages
export CC=/usr/lib64/openmpi/bin/mpicc

pip --no-cache-dir install \
    setuptools==39.1.0 numpy==1.14.5 tifffile==0.14.0 SimpleParse==2.1.1 redis==2.10.6 rq==0.12 \
    weave scikit-image opencv-python h5py pydicom Pillow django mpi4py pycuda