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authorSuren A. Chilingaryan <csa@suren.me>2021-03-07 05:57:02 +0100
committerSuren A. Chilingaryan <csa@suren.me>2021-03-07 05:57:02 +0100
commita819050e30bb6906858165796655c0c726843a3f (patch)
tree4cf4a054563f03052c98049c3d45904c3b498e0f
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Collect all relevant references from the latest publications
-rw-r--r--.bzr/README3
-rw-r--r--.bzr/branch-format1
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-rw-r--r--README4
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+This is a Bazaar control directory.
+Do not change any files in this directory.
+See http://bazaar.canonical.com/ for more information about Bazaar.
diff --git a/.bzr/branch-format b/.bzr/branch-format
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+Bazaar-NG meta directory, format 1
diff --git a/.bzr/branch/branch.conf b/.bzr/branch/branch.conf
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+++ b/.bzr/branch/branch.conf
@@ -0,0 +1 @@
+push_location = bzr+ssh://bzr.darksoft.org/csa/articles/bib/
diff --git a/.bzr/branch/format b/.bzr/branch/format
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+Bazaar Branch Format 7 (needs bzr 1.6)
diff --git a/.bzr/branch/last-revision b/.bzr/branch/last-revision
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+1 csa@suren.me-20180802225221-mu25mn22rnlfs497
diff --git a/.bzr/branch/tags b/.bzr/branch/tags
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+BZR conflict list format 1
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+Bazaar Working Tree Format 6 (bzr 1.14)
diff --git a/.bzr/checkout/views b/.bzr/checkout/views
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+Bazaar repository format 2a (needs bzr 1.16 or later)
diff --git a/.bzr/repository/indices/3ccd32c512374714774c0c9c8f632ace.cix b/.bzr/repository/indices/3ccd32c512374714774c0c9c8f632ace.cix
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+B+Tree Graph Index 2
+node_ref_lists=0
+key_elements=1
+len=0
+row_lengths=
diff --git a/.bzr/repository/indices/3ccd32c512374714774c0c9c8f632ace.tix b/.bzr/repository/indices/3ccd32c512374714774c0c9c8f632ace.tix
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+B+Tree Graph Index 2
+node_ref_lists=1
+key_elements=2
+len=3
+row_lengths=1
+xK
+0@QǮ"=_L2(t'O|4QY_8uv,Vݳ(@ -QB8 < {p8-Py#JSpc&Ԋ4JМbF24rM>R#dda]S KXM \ No newline at end of file
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diff --git a/README b/README
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+++ b/README
@@ -0,0 +1,4 @@
+# References
+
+* collab.bib: our stuff
+* refs.bib: other stuff
diff --git a/csa.bib b/csa.bib
new file mode 100644
index 0000000..9dff810
--- /dev/null
+++ b/csa.bib
@@ -0,0 +1,289 @@
+@article{eppler2004opc,
+ author = {W. {Eppler} and A. {Beglarian} and S. {Chilingarian} and S. {Kelly} and V. {Hartmann} and H. {Gemmeke}},
+ title = {New control system aspects for physical experiments},
+ journal = {IEEE Transactions on Nuclear Science},
+ volume = {51},
+ number = {3},
+ pages = {482-488},
+ year = {2004},
+ doi = {10.1109/TNS.2004.828633}
+}
+
+@article{csa2009xmlbench,
+ author = {Chilingaryan, Suren},
+ title = {The XMLBench Project: Comparison of Fast, Multi-platform XML libraries},
+ booktitle = {Lecture Notes in Computer Science},
+ publisher = {Springer},
+ number = {5667},
+ pages = {21--34},
+ year = {2009},
+ doi = {10.1007/978-3-642-04205-8_4}
+}
+
+@article{csa2009sevan,
+ author = {Chilingaryan, Suren and Chilingarian, Ashot and Danielyan, Varuzhan and Eppler, Wolfgang},
+ title = {Advanced data acquisition system for SEVAN},
+ journal = {Advances in Space Research},
+ volume = {43},
+ number = {4},
+ pages = {717--720},
+ year = {2009}
+}
+
+@article{csa2010adei,
+ author = {Chilingaryan, Suren and Beglarian, Armen and Kopmann, Andreas and Vöcking, Sebastian},
+ title = {Advanced data extraction infrastructure: Web based system for management of time series data},
+ journal = {Journal of Physics: Conference Series},
+ publisher = {{IOP} Publishing},
+ volume = {219},
+ number = {4},
+ pages = {042034},
+ year = 2010,
+ month = {Apr},
+ doi = {10.1088/1742-6596/219/4/042034},
+}
+
+@article{chili2010thunderstorm,
+ title = {Ground-based observations of thunderstorm-correlated fluxes of high-energy electrons, gamma rays, and neutrons},
+ author = {Chilingarian, A. and Daryan, A. and Arakelyan, K. and Hovhannisyan, A. and Mailyan, B. and Melkumyan, L. and Hovsepyan, G. and Chilingaryan, S. and Reymers, A. and Vanyan, L.},
+ journal = {Phys. Rev. D},
+ volume = {82},
+ issue = {4},
+ pages = {043009},
+ numpages = {11},
+ year = {2010},
+ month = {Aug},
+ publisher = {American Physical Society},
+ doi = {10.1103/PhysRevD.82.043009}
+}
+
+@article{csa2011pyhst,
+ title = {A GPU-based architecture for real-time data assessment at synchrotron experiments},
+ author = {Chilingaryan, Suren and Mirone, Alessandro and Hammersley, Andrew and Ferrero, Claudio and Helfen, Lukas and Kopmann, Andreas and dos Santos Rolo, Tomy and Vagovi\v{c}, Patrik},
+ doi = {10.1109/TNS.2011.2141686},
+ journal = {IEEE Transactions on Nuclear Science},
+ number = {4},
+ pages = {1447--1455},
+ publisher = {IEEE},
+ volume = {58},
+ year = {2011}
+}
+
+@inproceedings{vogelgesang2012ufo,
+ author = {Vogelgesang, Matthias and Chilingaryan, Suren and dos Santos Rolo, Tomy and Kopmann, Andreas},
+ booktitle = {Proceedings of The 14th IEEE Conference on High Performance Computing and Communication \& The 9th IEEE International Conference on Embedded Software and Systems (HPCC-ICESS)},
+ isbn = {978-1-4673-2164-8},
+ location = {Liverpool, UK},
+ month = {6},
+ pages = {824--829},
+ publisher = {IEEE Computer Society},
+ series = {HPCC '12},
+ title = {UFO: A Scalable GPU-based Image Processing Framework for On-line Monitoring},
+ year = {2012}
+}
+
+@article{anzt2012unified,
+ author = {Anzt, Hartwig and Beglarian, Armen and Chilingaryan, Suren and Ferrone, Andrew and Heuveline, Vincent and Kopmann, Andreas},
+ journal = {Computer Science-Research and Development},
+ pages = {1--8},
+ publisher = {Springer},
+ title = {A unified energy footprint for simulation software},
+ year = {2012}
+}
+
+@article{caselle2013camera,
+ author = {Caselle, M. and Chilingaryan, S. and Herth, A. and Kopmann, A. and Stevanovic, U. and Vogelgesang, M. and Balzer, M. and Weber, M.},
+ doi = {10.1109/TNS.2013.2252528},
+ issn = {0018-9499},
+ journal = {IEEE Transactions on Nuclear Science},
+ number = {5},
+ pages = {3669--3677},
+ title = {Ultrafast Streaming Camera Platform for Scientific Applications},
+ volume = {60},
+ year = {2013}
+}
+
+@article{caselle2014kapture,
+ author = {M Caselle and M Balzer and S Chilingaryan and M Hofherr and V Judin and A Kopmann and N J Smale and P Thoma and S Wuensch and A -S Müller and M Siegel and M Weber},
+ title = {An ultra-fast data acquisition system for coherent synchrotron radiation with terahertz detectors},
+ journal = {Journal of Instrumentation},
+ volume = {9},
+ number = {01},
+ pages = {C01024},
+ year = {2014}
+}
+
+@article{katrin2015detector,
+ author = {J.F. Amsbaugh and J. Barrett and A. Beglarian and T. Bergmann and H. Bichsel and L.I. Bodine and J. Bonn and N.M. Boyd and T.H. Burritt and Z. Chaoui and S. Chilingaryan and T.J. Corona and P.J. Doe and J.A. Dunmore and S. Enomoto and J.A. Formaggio and F.M. Fr.nkle and D. Furse and H. Gemmeke and F. Gl.ck and F. Harms and G.C. Harper and J. Hartmann and M.A. Howe and A. Kaboth and J. Kelsey and M. Knauer and A. Kopmann and M.L. Leber and E.L. Martin and K.J. Middleman and A.W. Myers and N.S. Oblath and D.S. Parno and D.A. Peterson and L. Petzold and D.G. Phillips and P. Renschler and R.G.H. Robertson and J. Schwarz and M. Steidl and D. Tcherniakhovski and T. Thümmler and T.D. Van Wechel and B.A. VanDevender and S. Vöcking and B.L. Wall and K.L. Wierman and J.F. Wilkerson and S. Wüustling},
+ title = {Focal-plane detector system for the KATRIN experiment},
+ journal = {Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment},
+ volume = {778},
+ pages = {40--60},
+ year = {2015},
+ issn = {0168-9002},
+ doi = {10.1016/j.nima.2014.12.116}
+}
+
+@article{ashkarin2015,
+ author = {Andrei Shkarin and Evelina Ametova and Suren Chilingaryan and Timo Dritschler and Andreas Kopmann and Matthias Vogelgesang and Roman Shkarin and Sergey Tsapko},
+ title = {An Open Source GPU Accelerated Framework for Flexible Algebraic Reconstruction at Synchrotron Light Sources},
+ journal = {Fundam. Inform.},
+ volume = {141},
+ number = {2-3},
+ pages = {259--274},
+ year = {2015},
+ doi = {10.3233/FI-2015-1275}
+}
+
+@article{rshkarin2015,
+ author = {Roman Shkarin and Evelina Ametova and Suren Chilingaryan and Timo Dritschler and Andreas Kopmann and Alessandro Mirone and Andrei Shkarin and Matthias Vogelgesang and Sergey Tsapko},
+ title = {GPU-optimized Direct Fourier Method for On-line Tomography},
+ journal = {Fundam. Inform.},
+ volume = {141},
+ number = {2-3},
+ pages = {245--258},
+ year = {2015},
+ doi = {10.3233/FI-2015-1274}
+}
+
+@article{stevanovic2015concert,
+ author = {U. Stevanovic and M. Caselle and A. Cecilia and S. Chilingaryan and T. Farago and S. Gasilov and A. Herth and A. Kopmann and M. Vogelgesang and M. Balzer and T. Baumbach and M. Weber},
+ title = {A Control System and Streaming DAQ Platform with Image-Based Trigger for X-ray Imaging},
+ journal = {IEEE Transactions on Nuclear Science},
+ year = {2015},
+ volume = {62},
+ number = {3},
+ pages = {911--918},
+ doi = {10.1109/TNS.2015.2425911},
+ ISSN = {0018-9499}
+}
+
+@article{rota2015dma,
+ author = {L. {Rota} and M. {Caselle} and S. {Chilingaryan} and A. {Kopmann} and M. {Weber}},
+ title = {A PCIe DMA Architecture for Multi-Gigabyte Per Second Data Transmission},
+ journal = {IEEE Transactions on Nuclear Science},
+ year = {2015},
+ volume = {62},
+ number = {3},
+ pages = {972-976},
+ doi = {10.1109/TNS.2015.2426877}
+}
+
+@inproceedings{vogelgesang2016dgma,
+ author = {Vogelgesang, Matthias and Rota, Lorenzo and Ardila Perez, Luis E. and Caselle, Michele and Chilingaryan, Suren and Kopmann, Andreas},
+ title = {High-throughput data acquisition and processing for real-time x-ray imaging},
+ booktitle = {Proc. SPIE},
+ volume = {9967},
+ pages = {996715--996715-9},
+ year = {2016},
+ doi = {10.1117/12.2237611}
+}
+
+@inproceedings{kopmann2017ufo,
+ author = {Kopmann, Andreas and Chilingaryan, Suren and Vogelgesang, Matthias and Shkarin, Andrey and Shkarin, Roman and Dos Santos Rolo, Tomy and Farago, Tomas and Van De Kamp, Thomas and Balzer, Matthias and Caselle, Michele and Weber, Marc and Baumbach, Tilo},
+ title = {UFO - a scalable platform for high-speed synchrotron X-ray imaging},
+ booktitle = {Proceedings of the 2016 IEEE NSS/MIC},
+ year = {2017}
+}
+
+@article{mohr2017cms,
+ author = {H. Mohr and T. Dritschler and L. E. Ardila and M. Balzer and M. Caselle and S. Chilingaryan and A. Kopmann and L. Rota and T. Schuh and M. Vogelgesang and M. Weber},
+ title = {Evaluation of GPUs as a level-1 track trigger for the High-Luminosity LHC},
+ journal = {Journal of Instrumentation},
+ volume = {12},
+ number = {04},
+ pages = {C04019},
+ year = {2017}
+}
+
+
+@inproceedings{ntj2017wave,
+ author = {Tan Jerome, Nicholas and Chilingaryan, Suren and Kopmann, Andreas and Shkarin, Andrey and Zapf, Michael and Lizin, Alexander and Bergmann, Till and Weber, Marc},
+ title = {WAVE: A 3D Online Previewing Framework for Big Data Archives},
+ booktitle = {Proceedings of the Intl.. Conf. on Computer Vision, Imaging, and Computer Graphics Theory and Applications (IVAPP)},
+ volume = {3},
+ pages = {152 -- 163},
+ year = {2017}
+}
+
+
+@article{katrin2018first,
+ author = {M. Arenz and W.-J. Baek and M. Beck and A. Beglarian and J. Behrens and T. Bergmann and A. Berlev and U. Besserer and K. Blaum and T. Bode and B. Bornschein and L. Bornschein and T. Brunst and N. Buzinsky and S. Chilingaryan and W.Q. Choi and M. Deffert and P.J. Doe and O. Dragoun and G. Drexlin and S. Dyba and F. Edzards and K. Eitel and E. Ellinger and R. Engel and S. Enomoto and M. Erhard and D. Eversheim and M. Fedkevych and S. Fischer and J.A. Formaggio and F.M. Fränkle and G.B. Franklin and F. Friedel and A. Fulst and W. Gil and F. Glück and A. Gonzalez Ureña and S. Grohmann and R. Grössle and R. Gumbsheimer and M. Hackenjos and V. Hannen and F. Harms and N. Haußmann and F. Heizmann and K. Helbing and W. Herz and S. Hickford and D. Hilk and D. Hillesheimer and M.A. Howe and A. Huber and A. Jansen and J. Kellerer and N. Kernert and L. Kippenbrock and M. Kleesiek and M. Klein and A. Kopmann and M. Korzeczek and A. Kovalík and B. Krasch and M. Kraus and L. Kuckert and T. Lasserre and O. Lebeda and J. Letnev and A. Lokhov and M. Machatschek and A. Marsteller and E.L. Martin and S. Mertens and S. Mirz and B. Monreal and U. Naumann and H. Neumann and S. Niemes and A. Off and H.-W. Ortjohann and A. Osipowicz and E. Otten and D.S. Parno and A. Pollithy and A.W.P. Poon and F. Priester and P.C.-O. Ranitzsch and O. Rest and R.G.H. Robertson and F. Roccati and C. Rodenbeck and M. Röllig and C. Röttele and M. Ryšavý and R. Sack and A. Saenz and L. Schimpf and K. Schlösser and M. Schlösser and K. Schönung and M. Schrank and H. Seitz-Moskaliuk and J. Sentkerestiová and V. Sibille and M. Slezák and M. Steidl and N. Steinbrink and M. Sturm and M. Suchopar and M. Suesser and H.H. Telle and L.A. Thorne and T. Thümmler and N. Titov and I. Tkachev and N. Trost and K. Valerius and D. Vénos and R. Vianden and A.P. Vizcaya Hernández and M. Weber and C. Weinheimer and C. Weiss and S. Welte and J. Wendel and J.F. Wilkerson and J. Wolf and S. Wüstling and S. Zadoroghny},
+ title = {First transmission of electrons and ions through the KATRIN beamline},
+ journal = {Journal of Instrumentation},
+ volume = {13},
+ number = {04},
+ pages = {P04020},
+ year = {2018}
+}
+
+@article{cavadini2018upiv,
+ author = {Cavadini, Philipp and Weinhold, Hannes and Tönsmann, Max and Chilingaryan, Suren and Kopmann, Andreas and Lewkowicz, Alexander and Miao, Chuan and Scharfer, Philip and Schabel, Wilhelm},
+ title = {Investigation of the flow structure in thin polymer films using 3D µPTV enhanced by GPU},
+ copyright = {Springer-Verlag GmbH Germany, part of Springer Nature},
+ doi = {10.1007/s00348-017-2482-z},
+ journal = {Experiments in Fluids},
+ language = {English},
+ month = {3},
+ number = {4},
+ pages = {1-13},
+ volume = {59},
+ year = {2018},
+}
+
+@inproceedings{csa2018sbac,
+ author = {Chilingaryan, Suren and Ametova, Evelina and Kopmann, Andreas and Mirone, Alessandro},
+ title = {Balancing load of GPU subsystems to accelerate image reconstruction in parallel beam tomography},
+ booktitle = {Proceedings of the 30th International Symposium on Computer Architecture and High Performance Computing (SBAC-PAD)},
+ year = {2018}
+}
+
+
+@article{katrin2019limit,
+ author = {Aker, M. and Altenm\"uller, K. and Arenz, M. and Babutzka, M. and Barrett, J. and Bauer, S. and Beck, M. and Beglarian, A. and Behrens, J. and Bergmann, T. and Besserer, U. and Blaum, K. and Block, F. and Bobien, S. and Bokeloh, K. and Bonn, J. and Bornschein, B. and Bornschein, L. and Bouquet, H. and Brunst, T. and Caldwell, T. S. and La Cascio, L. and Chilingaryan, S. and Choi, W. and Corona, T. J. and Debowski, K. and Deffert, M. and Descher, M. and Doe, P. J. and Dragoun, O. and Drexlin, G. and Dunmore, J. A. and Dyba, S. and Edzards, F. and Eisenbl\"atter, L. and Eitel, K. and Ellinger, E. and Engel, R. and Enomoto, S. and Erhard, M. and Eversheim, D. and Fedkevych, M. and Felden, A. and Fischer, S. and Flatt, B. and Formaggio, J. A. and Fr\"ankle, F. M. and Franklin, G. B. and Frankrone, H. and Friedel, F. and Fuchs, D. and Fulst, A. and Furse, D. and Gauda, K. and Gemmeke, H. and Gil, W. and Gl\"uck, F. and G\"orhardt, S. and Groh, S. and Grohmann, S. and Gr\"ossle, R. and Gumbsheimer, R. and Ha Minh, M. and Hackenjos, M. and Hannen, V. and Harms, F. and Hartmann, J. and Hau\ss{}mann, N. and Heizmann, F. and Helbing, K. and Hickford, S. and Hilk, D. and Hillen, B. and Hillesheimer, D. and Hinz, D. and H\"ohn, T. and Holzapfel, B. and Holzmann, S. and Houdy, T. and Howe, M. A. and Huber, A. and James, T. M. and Jansen, A. and Kaboth, A. and Karl, C. and Kazachenko, O. and Kellerer, J. and Kernert, N. and Kippenbrock, L. and Kleesiek, M. and Klein, M. and K\"ohler, C. and K\"ollenberger, L. and Kopmann, A. and Korzeczek, M. and Kosmider, A. and Koval\'{\i}k, A. and Krasch, B. and Kraus, M. and Krause, H. and Kuckert, L. and Kuffner, B. and Kunka, N. and Lasserre, T. and Le, T. L. and Lebeda, O. and Leber, M. and Lehnert, B. and Letnev, J. and Leven, F. and Lichter, S. and Lobashev, V. M. and Lokhov, A. and Machatschek, M. and Malcherek, E. and M\"uller, K. and Mark, M. and Marsteller, A. and Martin, E. L. and Melzer, C. and Menshikov, A. and Mertens, S. and Minter, L. I. and Mirz, S. and Monreal, B. and Morales Guzm\'an, P. I. and M\"uller, K. and Naumann, U. and Ndeke, W. and Neumann, H. and Niemes, S. and Noe, M. and Oblath, N. S. and Ortjohann, H.-W. and Osipowicz, A. and Ostrick, B. and Otten, E. and Parno, D. S. and Phillips, D. G. and Plischke, P. and Pollithy, A. and Poon, A. W. P. and Pouryamout, J. and Prall, M. and Priester, F. and R\"ollig, M. and R\"ottele, C. and Ranitzsch, P. C.-O. and Rest, O. and Rinderspacher, R. and Robertson, R. G. H. and Rodenbeck, C. and Rohr, P. and Roll, Ch. and Rupp, S. and Ry\ifmmode \check{s}\else \v{s}\fi{}av\'y, M. and Sack, R. and Saenz, A. and Sch\"afer, P. and Schimpf, L. and Schl\"osser, K. and Schl\"osser, M. and Schl\"uter, L. and Sch\"on, H. and Sch\"onung, K. and Schrank, M. and Schulz, B. and Schwarz, J. and Seitz-Moskaliuk, H. and Seller, W. and Sibille, V. and Siegmann, D. and Skasyrskaya, A. and Slez\'ak, M. and \ifmmode \check{S}\else \v{S}\fi{}palek, A. and Spanier, F. and Steidl, M. and Steinbrink, N. and Sturm, M. and Suesser, M. and Sun, M. and Tcherniakhovski, D. and Telle, H. H. and Th\"ummler, T. and Thorne, L. A. and Titov, N. and Tkachev, I. and Trost, N. and Urban, K. and V\'enos, D. and Valerius, K. and VanDevender, B. A. and Vianden, R. and Vizcaya Hern\'andez, A. P. and Wall, B. L. and W\"ustling, S. and Weber, M. and Weinheimer, C. and Weiss, C. and Welte, S. and Wendel, J. and Wierman, K. J. and Wilkerson, J. F. and Wolf, J. and Xu, W. and Yen, Y.-R. and Zacher, M. and Zadorozhny, S. and Zbo\ifmmode \check{r}\else \v{r}\fi{}il, M. and Zeller, G.},
+ title = {Improved Upper Limit on the Neutrino Mass from a Direct Kinematic Method by KATRIN},
+ collaboration = {KATRIN Collaboration},
+ journal = {Phys. Rev. Lett.},
+ volume = {123},
+ issue = {22},
+ pages = {221802},
+ numpages = {10},
+ year = {2019},
+ month = {Nov},
+ publisher = {American Physical Society},
+ doi = {10.1103/PhysRevLett.123.221802}
+}
+
+@article{losel2020biomedisa,
+ author = {L{\"o}sel, Philipp D. and van de Kamp, Thomas and Jayme, Alejandra and Ershov, Alexey and Farag{\'o}, Tom{\'a}{\v{s}} and Pichler, Olaf and Tan Jerome, Nicholas and Aadepu, Narendar and Bremer, Sabine and Chilingaryan, Suren A. and Heethoff, Michael and Kopmann, Andreas and Odar, Janes and Schmelzle, Sebastian and Zuber, Marcus and Wittbrodt, Joachim and Baumbach, Tilo and Heuveline, Vincent},
+ title = {Introducing Biomedisa as an open-source online platform for biomedical image segmentation},
+ journal = {Nature Communications},
+ volume = {11},
+ number = {1},
+ pages = {5577},
+ year = {2020},
+ month = {Nov},
+ doi = {10.1038/s41467-020-19303-w}
+}
+
+@article{csa2020rtip,
+ author = {Chilingaryan, Suren and Ametova, Evelina and Kopmann, Anreas and Mirone, Alessandro},
+ title = {Reviewing GPU architectures to build efficient back projection for parallel geometries},
+ journal = {Journal of Real-Time Image Processing},
+ language = {English},
+ volume = {17},
+ issue = {5},
+ pages = {1331--1373},
+ month = {10},
+ year = {2020},
+ doi = {10.1007/s11554-019-00883-w},
+}
+
+@misc{ametova2021neutron,
+ author = {Evelina Ametova and Genoveva Burca and Suren Chilingaryan and Gemma Fardell and Jakob S. Jørgensen and Evangelos Papoutsellis and Edoardo Pasca and Ryan Warr and Martin Turner and William R. B. Lionheart and Philip J. Withers},
+ title = {Crystalline phase discriminating neutron tomography using advanced reconstruction methods},
+ primaryClass = {physics.med-ph},
+ archivePrefix = {arXiv},
+ eprint = {2102.06706},
+ year = {2021}
+} \ No newline at end of file
diff --git a/csaproc.bib b/csaproc.bib
new file mode 100644
index 0000000..f87923f
--- /dev/null
+++ b/csaproc.bib
@@ -0,0 +1,44 @@
+@inproceedings{vardanyan2001sand,
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+}
+
+@inproceedings{csa2011sc,
+ author = {Chilingaryan, Suren and Kopmann, Andreas and Mirone, Alessandro and dos Santos Rolo, Tomy and Vogelgesang, Matthias},
+ title = {A GPU-based Architecture for Real-time Data Assessment at Synchrotron Experiments},
+ booktitle = {Proceedings of the 2011 Companion on High Performance Computing Networking, Storage and Analysis Companion},
+ series = {SC '11 Companion},
+ year = {2011},
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+ doi = {10.1145/2148600.2148627}
+}
+
+@inproceedings{haas2012status,
+ author = {Haas, D. and Mexner, W. and Spangenberg, T. and Cecilia, A. and Vagovi\v{c}, P. and Kopmann, A. and Balzer, M. and Vogelgesang, M. Pasic, H. and Chilingaryan, S.},
+ booktitle = {Proceedings of PCaPAC2012, Kolkata, India},
+ series = {},
+ title = {Status of the ultra fast tomography experiments control at ANKA},
+ year = {2012}
+}
+
+@inproceedings{caselle2012ultra,
+ author = {Caselle, Michele and Chilingaryan, Suren and Herth, Armin and Kopmann, Andreas and Stevanovic, Uros and Vogelgesang, Matthias and Balzer, Matthias and Weber, Marc},
+ booktitle = {Real Time Conference (RT), 2012 18th IEEE-NPSS},
+ organization = {IEEE},
+ pages = {1--8},
+ title = {Ultra-fast streaming camera platform for scientific applications},
+ year = {2012}
+}
+
+@inproceedings{dritschler2014using,
+ author = {Dritschler, Timo and Chilingaryan, Suren and Farago, Tomas and Kopmann, Andreas and Vogelgesang, Matthias},
+ booktitle = {Proceedings of the 10th International Workshop on Personal Computers and Particle Accelerators},
+ note = {to appear},
+ series = {PCAPAC '14},
+ title = {InfiniBand interconnects for high-throughput data acquisition in a TANGO environment},
+ year = {2014}
+}
diff --git a/perfrefs.bib b/perfrefs.bib
new file mode 100644
index 0000000..9ece185
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+ journal = {IEEE Trans. Parallel Distrib. Syst.},
+ volume = {28},
+ number = {1},
+ pages = {72--86},
+ publisher = {IEEE Press},
+ year = {2017},
+ issn = {1045-9219},
+ doi = {10.1109/TPDS.2016.2549523},
+}
+
+@inproceedings{zhang2017performance,
+ author = {Zhang, Xiuxia and Tan, Guangming and Xue, Shuangbai and Li, Jiajia and Zhou, Keren and Chen, Mingyu},
+ title = {Understanding the GPU Microarchitecture to Achieve Bare-Metal Performance Tuning},
+ booktitle = {Proceedings of the 22Nd ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming},
+ series = {PPoPP '17},
+ year = {2017},
+ isbn = {978-1-4503-4493-7},
+ pages = {31--43},
+ doi = {10.1145/3018743.3018755},
+ publisher = {ACM}
+}
+
+@article{lim2017autotuning,
+ author = {Robert V. Lim and Boyana Norris and Allen D. Malony},
+ title = {Autotuning {GPU} Kernels via Static and Predictive Analysis},
+ journal = {CoRR},
+ volume = {abs/1701.08547},
+ year = {2017},
+ url = {http://arxiv.org/abs/1701.08547}
+}
+
+@phdthesis{volkov2016thesis,
+ author = {Volkov, Vasily},
+ title = {Understanding Latency Hiding on GPUs},
+ school = {EECS Department, University of California, Berkeley},
+ number = {UCB/EECS-2016-143},
+ year = {2016},
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+}
+
+@inbook{mei2014,
+ author = {Mei, Xinxin and Zhao, Kaiyong and Liu, Chengjian and Chu, Xiaowen},
+ title = {Benchmarking the Memory Hierarchy of Modern GPUs},
+ booktitle = {Network and Parallel Computing: 11th IFIP WG 10.3 International Conference},
+ year = {2014},
+ publisher = {Springer Berlin Heidelberg},
+ pages = {144--156},
+ isbn = {978-3-662-44917-2},
+ doi = {10.1007/978-3-662-44917-2_13},
+}
+
+
+@article{zhang2014performance,
+ author = {Zhang, Ying and Peng, Lu and Li, Bin and Peir, Jih-Kwon and Chen, Jianmin},
+ title = {Performance and Power Comparisons Between Nvidia and ATI GPUs},
+ journal = {International Journal of Computer Science \& Information Technology},
+ volume = {6},
+ number = {6},
+ year = {2014}
+}
+
+@inproceedings{zhang2011ati,
+ author = {Zhang, Ying and Hu, Yue and Li, Bin and Peng, Lu},
+ title = {Performance and power analysis of ATI GPU: A statistical approach},
+ booktitle = {Networking, Architecture and Storage (NAS), 6th IEEE International Conference on},
+ pages = {149--158},
+ year = {2011}
+}
+
+@inproceedings{volkov2010occupation,
+ author = {Volkov, Vasily},
+ title = {Better performance at lower occupancy},
+ booktitle = {Proceedings of the GPU technology conference (GTC)},
+ volume = {10},
+ pages = {16},
+ year = {2010}
+}
+
+@inproceedings{konstantinidis2016gpumembench,
+ author = {E. Konstantinidis and Y. Cotronis},
+ title = {A Quantitative Performance Evaluation of Fast on-Chip Memories of GPUs},
+ booktitle= {24th Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP)},
+ pages = {448-455},
+ year = {2016},
+ doi = {10.1109/PDP.2016.56}
+}
+
+@article{konstantinidis2017mixbench,
+ author = {Elias Konstantinidis and Yiannis Cotronis},
+ title = {A quantitative roofline model for GPU kernel performance estimation using micro-benchmarks and hardware metric profiling},
+ journal = {Journal of Parallel and Distributed Computing},
+ volume = {107},
+ pages = {37 - 56},
+ year = {2017},
+ doi = {10.1016/j.jpdc.2017.04.002}
+}
diff --git a/ufocollab.bib b/ufocollab.bib
new file mode 100644
index 0000000..bebc012
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@@ -0,0 +1,291 @@
+@article{vdk2018,
+ title = {Parasitoid biology preserved in mineralized fossils},
+ author = {van de Kamp, Thomas and Schwermann, Achim and dos Santos Rolo, Tomy and Lösel, Philipp and Engler, Thomas and Etter, Walter and Faragó, Tomáš and Göttlicher, Jörg and Heuveline, Vincent and Kopmann, Andreas and Mähler, Bastian and Mörs, Thomas and Odar, Janes and Rust, Jes and Tan Jerome, Nicholas and Vogelgesang, Matthias and Baumbach, Tilo and Krogmann, Lars},
+ journal = {Nature Communications},
+ volume = {9},
+ number = {3325},
+ year = {2018},
+ doi = {10.1038/s41467-018-05654-y}
+}
+
+@article{rolo2014cine,
+ title = {In vivo X-ray cine-tomography for tracking morphological dynamics},
+ author = {dos Santos Rolo, Tomy and Ershov, Alexey and van de Kamp, Thomas and Baumbach, Tilo},
+ journal = {Proceedings of the National Academy of Sciences},
+ volume = {111},
+ number = {11},
+ pages = {3921--3926},
+ year = {2014},
+ publisher = {National Acad Sciences}
+}
+
+@article{xiao2014fast,
+ title = {Fast synchrotron X-ray tomography study of the packing structures of rods with different aspect ratios},
+ author = {Xiao-Dan, Zhang and Cheng-Jie, Xia and Xiang-Hui, Xiao and Yu-Jie, Wang},
+ journal = {Chinese Physics B},
+ volume = {23},
+ number = {4},
+ pages = {044501},
+ year = {2014},
+ publisher = {IOP Publishing}
+}
+
+
+@inproceedings{mexner2013anewflexible,
+ author = {Mexner, W. and Ressman D. and Spangenberg, T. and Pasic, H. and Iurchenko, E.},
+ booktitle = {Proceedings of the 14th International Conference on Accelerator \& Large Experimental Physics Control Systems},
+ series = {ICALEPCS '13},
+ title = {A new flexible integraton of NeXus data sets to ANKA by FUSE file system},
+ year = {2013}
+}
+
+@article{myagotin2013efficient,
+ address = {Piscataway, NJ, USA},
+ author = {Myagotin, A. and Voropaev, A. and Helfen, L. and Hanschke, D. and Baumbach, T.},
+ doi = {10.1109/TIP.2013.2285600},
+ issn = {1057-7149},
+ journal = {Image Processing, IEEE Transactions on},
+ month = {12},
+ number = {12},
+ pages = {5348--5361},
+ publisher = {IEEE Press},
+ title = {Efficient Volume Reconstruction for Parallel-Beam Computed Laminography by Filtered Backprojection on Multi-Core Clusters},
+ volume = {22},
+ year = {2013}
+}
+
+@article{dosSantosRolo2013invivo,
+ author = {dos Santos Rolo, Tomy and Ershov, Alexey and van de Kamp, Thomas and Baumbach, Tilo},
+ doi = {10.1073/pnas.1308650111},
+ journal = {Proceedings of the National Academy of Sciences},
+ number = {11},
+ pages = {3921-3926},
+ title = {In vivo X-ray cine-tomography for tracking morphological dynamics},
+ volume = {111},
+ year = {2014}
+}
+
+@techreport{stotzka2013data,
+ author = {Stotzka, Rainer},
+ institution = {Institute for Data Processing and Electronics (IPE)},
+ title = {Data Life Cycle Lab. Key Technologies. Status 2013. Big Data in Science},
+ urn = {http://digbib.ubka.uni-karlsruhe.de/volltexte/1000037134},
+ year = {2013}
+}
+
+@article{vrsacki2013cockroaches,
+ author = {Vr\v{s}ansk\'{y}, P. and van de Kamp, T. and Azar, D. and Prokin, A. and Vidli\v{c}kag, L. and Vagovi\v{c}, P.},
+ doi = {10.1371/journal.pone.0080560},
+ issn = {},
+ journal = {PLoS ONE},
+ month = {12},
+ number = {12},
+ pages = {5348-5361},
+ title = {Cockroaches probably cleaned up after dinosaurs},
+ volume = {8},
+ year = {2013}
+}
+
+@article{vandekamp2013insect,
+ author = {van de Kamp, Thomas and Alexey, Ershov and dos Santos Rolo, Tomy and Alexander, Riedel and Tilo, Baumbach},
+ journal = {Entomologie heute},
+ number = {25},
+ pages = {147-160},
+ title = {Insect imaging at the ANKA synchrotron radiation facility},
+ volume = {11}
+}
+
+@inproceedings{haas2013implementation,
+ author = {Haas, D. and Mexner, W. and Spangenberg, T. and Pasic, H.},
+ booktitle = {Proceedings of the 14th International Conference on Accelerator \& Large Experimental Physics Control Systems},
+ series = {ICALEPCS '13},
+ title = {Implementation of an Overall Data Management at the Tomography Station at ANKA},
+ year = {2013}
+}
+
+@inproceedings{vogelgesang2013concert,
+ author = {Vogelgesang, M. and Farago, T. and dos Santos Rolo, T. and Kopmann, A. and Baumbach, T.},
+ booktitle = {Proceedings of the 14th International Conference on Accelerator \& Large Experimental Physics Control Systems},
+ series = {ICALEPCS '13},
+ title = {When Hardware and Software Work in Concert},
+ year = {2013}
+}
+
+@inproceedings{yang2013algebraic,
+ author = {Yang, H. and Jejkal, T. and Stotzka, R. and Pasic, H. and dos Santos Rolo, T.},
+ booktitle = {Proceedings of ICALEPS 2013},
+ series = {ICALEPCS '13},
+ title = {Algebraic Reconstruction of Ultrafast Tomography Images at the Large Scale Data Facility},
+ year = {2013}
+}
+
+@inproceedings{yang2013dataintensiveproceed,
+ author = {Yang, X. and Jejkal, T. and Pasic, H. and Stotzka, R. and Streit, A. and van Wezel, J. and dos Santos Rolo, T.},
+ booktitle = {Parallel, Distributed and Network-Based Processing (PDP), 2013 21st Euromicro International Conference on},
+ doi = {10.1109/PDP.2013.21},
+ issn = {1066-6192},
+ month = {2},
+ pages = {86-93},
+ title = {Data Intensive Computing of X-Ray Computed Tomography Reconstruction at the LSDF},
+ year = {2013}
+}
+
+@article{yang2013dataintensive,
+ address = {Los Alamitos, CA, USA},
+ author = {Xiaoli Yang and Thomas Jejkal and Halil Pasic and Rainer Stotzka and Achim Streit and Jos van Wezel and Tomy dos Santos Rolo},
+ doi = {http://doi.ieeecomputersociety.org/10.1109/PDP.2013.21},
+ issn = {1066-6192},
+ journal = {2014 22nd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing},
+ pages = {86-93},
+ publisher = {IEEE Computer Society},
+ title = {Data Intensive Computing of X-Ray Computed Tomography Reconstruction at the LSDF},
+ volume = {0},
+ year = {2013}
+}
+
+@article{douissard2012versatile,
+ author = {Douissard, P-A and Cecilia, A. and Rochet, X. and Chapel, X. and Martin, T. and van de Kamp, T. and Helfen, L. and Baumbach, T. and Luquot, L. and Xiao, X. and others},
+ journal = {Journal of Instrumentation},
+ number = {09},
+ pages = {P09016},
+ publisher = {IOP Publishing},
+ title = {A versatile indirect detector design for hard X-ray microimaging},
+ volume = {7},
+ year = {2012}
+}
+
+@article{myagotin2012fast,
+ author = {Myagotin, A. and Voropaev, A. and Helfen, L. and H{\"a}nschke, D. and Baumbach, T.},
+ journal = {International Journal of Materials Research},
+ number = {09},
+ pages = {170--173},
+ publisher = {},
+ title = {Fast volume reconstruction for parallel-beam computed laminography by filtered backprojection},
+ volume = {},
+ year = {2012}
+}
+
+@article{riedel2012sayrevilleinae,
+ author = {Riedel, Alexander and dos Santos Rolo, Tomy and Cecilia, Angelica and Van De Kamp, Thomas},
+ journal = {Zoological Journal of the Linnean Society},
+ number = {4},
+ pages = {773--794},
+ publisher = {Wiley Online Library},
+ title = {Sayrevilleinae Legalov, a newly recognised subfamily of fossil weevils (Coleoptera, Curculionoidea, Attelabidae) and the use of synchrotron microtomography to examine inclusions in amber},
+ volume = {165},
+ year = {2012}
+}
+
+@article{xu2012comparison,
+ author = {Feng Xu and Lukas Helfen and Tilo Baumbach and Heikki Suhonen},
+ doi = {10.1364/OE.20.000794},
+ journal = {Opt. Express},
+ keyword = {Imaging systems; X-ray imaging; Computational imaging ; Tomographic imaging},
+ month = {Jan},
+ number = {2},
+ pages = {794--806},
+ publisher = {OSA},
+ title = {Comparison of image quality in computed laminography and tomography},
+ volume = {20},
+ year = {2012}
+}
+
+@inproceedings{alaribe2011growth,
+ author = {Alaribe, L. and Dish, C. and Fauler, A. and Engels, R. and Keler, E. and Cecilia, A. and dos Santos Rolo, T. and Fiederle, M},
+ booktitle = {Proc. of SC11 Supercomputing Conference},
+ pages = {1341},
+ title = {Bridgman: Growth of SrI2},
+ year = {2011}
+}
+
+@article{altapova2011xray,
+ author = {Altapova, V. and Butzer, J. and Rolo, T. and Vagovi\v{c}, P. and Cecilia, A. and Moosmann, J. and Kenntner, J. and Mohr, J. and Pelliccia, D. and Pichugin, V. and Baumbach, T.},
+ doi = {10.1016/j.nima.2010.12.218},
+ journal = {Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment},
+ number = {},
+ pages = {42--45},
+ publisher = {},
+ title = {X-ray phase-contrast radiography using a filtered white beam with a grating interferometer},
+ volume = {648},
+ year = {2011}
+}
+
+@article{cecilia2011characterization,
+ author = {Cecilia, A. and Rack, A. and Douissard, P.-A. and Martin, T. and dos Santos Rolo, T. and Vagovi\v{c}, P. and Pelliccia, D. and Couchaud, M. and Dupre, K. and Baumbach, T.},
+ doi = {},
+ journal = {Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment},
+ number = {},
+ pages = {292--293},
+ publisher = {},
+ title = {Characterisation of {LSO:Tb} scintillator films for high resolution X-ray imaging applications},
+ volume = {633},
+ year = {2011}
+}
+
+@article{danilewsky2011realtime,
+ author = {Danilewsky, A. N. and Wittge, J. and Hess, A. and Cr{\"o}ll, A. and Rack, A. and Allen, D. and McNally, P. and dos Santos Rolo, T. and Vagovi\v{c}, P. and Baumbach, T. and Garagorri, J. and Elizalde, M. R. and Tanner, B. K.},
+ doi = {10.1002/pssa.201184264},
+ journal = {Physica status solidi (a)},
+ number = {11},
+ pages = {2499--2504},
+ publisher = {WILEY-VCH Verlag},
+ title = {Real-time X-ray diffraction imaging for semiconductor wafer metrology and high temperature in situ experiments},
+ volume = {208},
+ year = {2011}
+}
+
+@article{danilewsky2011dislocation,
+ author = {Danilewsky, A. N. and Wittge, J. and Cr{\"o}ll, A. and Allen, D. and McNally, P. and dos Santos Rolo, T. and Li, Z. and Baumbach, T. and Gorostegui-Colinas, E. and Garagorri, J. and Elizalde, M. and Fossati, M. and Bowen, D. and Tanner, B. K.},
+ doi = {10.1016/j.jcrysgro.2010.10.199},
+ journal = {Journal of Crystal Growth},
+ number = {1},
+ pages = {1157--1163},
+ publisher = {},
+ title = {Dislocation dynamics and slip band formation in silicon: In-situ study by {X}-ray diffraction imaging},
+ volume = {318},
+ year = {2011}
+}
+
+@article{vandekamp2011abiological,
+ author = {van de Kamp, T. and Vagovi\v{c}, P. and Baumbach, T. and Riedel, A.},
+ doi = {10.1126/science.1204245},
+ journal = {Science},
+ number = {6038},
+ pages = {52},
+ publisher = {},
+ title = {A biological screw in a beetle’s leg},
+ volume = {333},
+ year = {2011}
+}
+
+@article{myagotin2011fast,
+ author = {Myagotin, A. and Voropaev, A. and Helfen, L. and H{\"a}nschke, D. and Baumbach, T.},
+ journal = {J. Parallel Distrib. Comput., submitted},
+ title = {Fast volume reconstruction for parallel-beam computed laminography by filtered backprojection},
+ year = {2011}
+}
+
+@inproceedings{stotzka2011lsdf,
+ title = {Perspective of the Large Scale Data Facility (LSDF) supporting
+ nuclear fusion applications},
+ author = {Stotzka, Rainer and Hartmann, Volker and Jejkal, Thomas and
+ Sutter, Michael and van Wezel, Jos and Hardt, Marcus and Garcia, Ariel and
+ Kupsch, Rainer and Bourov, Serguei},
+ booktitle = {Parallel, Distributed and Network-Based Processing (PDP),
+ 2011 19th Euromicro International Conference on},
+ pages = {373--379},
+ year = {2011},
+ organization = {IEEE}
+}
+
+@article{cecilia2010LPE,
+ author = {Cecilia, A. and Rack, A. and Douissard, P.-A. and Martin, T. and dos Santos Rolo, T. and Vagovi\v{c}, P. and Hamman, D. and van de Kamp, T. and Riedel, A. and Fiederle, M. and Baumbach, T.},
+ doi = {10.1016/j.nima.2010.10.150},
+ journal = {Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment},
+ number = {},
+ pages = {292--293},
+ publisher = {},
+ title = {{LPE} grown {LSO:Tb} scintillator films for high resolution X-ray imaging applications at synchrotron light sources},
+ volume = {633},
+ year = {2010}
+}
diff --git a/uforefs.bib b/uforefs.bib
new file mode 100644
index 0000000..28f4139
--- /dev/null
+++ b/uforefs.bib
@@ -0,0 +1,533 @@
+@String{acm = "ACM Press"}
+@String{acm_adr = "New York, NY, USA"}
+@String{ieee_cs = "IEEE Computer Society"}
+@String{ieee_cs_ca_adr = "Los Alamitos, CA, USA"}
+@String{j_sync_rad = "Journal of Synchrotron Radiation"}
+
+@article{palenstijn2017astra,
+ author = {Palenstijn, W. J. and B\'{e}dorf, J. and Sijbers, J. and Batenburg, K. J.},
+ title = {A distributed ASTRA toolbox},
+ journal = {Advanced Structural and Chemical Imaging},
+ year = {2017},
+ volume = {2},
+ number = {1},
+ pages = {18},
+ doi = {10.1186/s40679-016-0032-z}
+}
+
+@article {kamm2016foam,
+ title = {Fast Synchrotron X-Ray Tomography of Dynamic Processes in Liquid Aluminium Alloy Foam },
+ author = {Kamm, Paul Hans and García-Moreno, Francisco and Neu, Tillmann Robert and Heim, Korbinian and Mokso, Rajmund and Banhart, John},
+ journal = {Advanced Engineering Materials},
+ year = {2016},
+ issn = {1527-2648},
+ doi = {10.1002/adem.201600550}
+}
+
+
+@article{anderson2016fbpconv,
+ author = {Fredrik Andersson and Marcus Carlsson and Viktor V. Nikitin},
+ title = {Fast Algorithms and Efficient GPU Implementations for the Radon Transform and the Back-Projection Operator Represented as Convolution Operators},
+ journal = {SIAM Journal on Imaging Sciences},
+ volume = {9},
+ number = {2},
+ pages = {637--664},
+ year = {2016},
+ doi = {10.1137/15M1023762}
+}
+
+@article{maire2016,
+ title = {20 Hz X-ray tomography during an in situ tensile test},
+ author = {Maire, E. and Bourlot, C. and Adrien, J. and Mortensen, A. and Mokso, R.},
+ journal = {Int. J. Fract.},
+ year = {2016},
+ volume = {200},
+ doi = {10.1007/s10704-016-0077-y}
+}
+
+@article{aarle2016astra,
+ author = {Wim van Aarle and Willem Jan Palenstijn and Jeroen Cant and Eline Janssens and Folkert Bleichrodt and Andrei Dabravolski and Jan De Beenhouwer and K. Joost Batenburg and Jan Sijbers},
+ title = {Fast and flexible X-ray tomography using the ASTRA toolbox},
+ journal = {Opt. Express},
+ year = {2016},
+ volume = {24},
+ number = {22},
+ pages = {25129--25147},
+ doi = {10.1364/OE.24.025129}
+}
+
+@article{mokso2015fly,
+ title = {Four-dimensional in vivo X-ray microscopy with projection-guided gating},
+ author = {Mokso, Rajmund and Schwyn, Daniel and Walker, Simon and Doube, Michael and Wicklein, Martina and M\"{u}ller, Tonya and Stampanoni, Marco and Taylor, Graham and Krapp, Holger },
+ journal = {Scientific Reports},
+ year = {2015},
+ volume = {5},
+ pages = {8727},
+ doi = {10.1038/srep08727}
+}
+
+@article{decarlo2014tomopy,
+ title = {TomoPy: A framework for the analysis of synchrotron tomographic data},
+ author = {G\"{u}rsoy, Do\v{g}a and De Carlo, Francesco and Xiao, Xianghui and Jacobsen, Chris},
+ journal = j_sync_rad,
+ year = {2014},
+ volume = {21},
+ doi = {10.1107/S1600577514013939}
+}
+
+@article{mirone2014pyhst2,
+ author = {Mirone, Alessandro and Brun, Emmanuelle and Gouillart, Emmanuelle and Tafforeau, Paul and Kieffer, Jerome},
+ title = {{The PyHST2 hybrid distributed code for high speed tomographic reconstruction with iterative reconstruction and a priori knowledge capabilities}},
+ journal = {Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms},
+ year = {2014},
+ volume = {324},
+ pages = {41--48},
+ doi = {10.1016/j.nimb.2013.09.030},
+}
+
+@article{gursoy2014tomopy,
+ author = {G{\"{u}}rsoy, Do{\v{g}}a and De Carlo, Francesco and Xiao, Xianghui and Jacobsen, Chris},
+ title = {TomoPy: a framework for the analysis of synchrotron~tomographic data},
+ journal = {Journal of Synchrotron Radiation},
+ year = {2014},
+ volume = {21},
+ number = {5},
+ pages = {1188--1193},
+ doi = {10.1107/S1600577514013939}
+}
+
+@article{rit2014rtk,
+ author = {Rit, S. and Vila Oliva, M. and Brousmiche, S. and Labarbe, R. and Sarrut, D. and Sharp, G. C.},
+ title = {{The Reconstruction Toolkit (RTK), an open-source cone-beam CT reconstruction toolkit based on the Insight Toolkit (ITK)}},
+ journal = {Journal of Physics: Conference Series},
+ year = {2014},
+ volume = {489},
+ pages = {1--4},
+ doi = {doi:10.1088/1742-6596/489/1/012079},
+}
+
+@article{treibig2013simd,
+ author = {Jan Treibig and Georg Hager and Hannes G. Hofmann and Joachim Hornegger and Gerhard Wellein},
+ title = {Pushing the limits for medical image reconstruction on recent standard multicore processors},
+ journal = {The International Journal of High Performance Computing Applications},
+ volume = {27},
+ number = {2},
+ pages = {162--177},
+ year = {2013},
+ doi = {10.1177/1094342012442424}
+}
+
+@inproceedings{zinsser2013,
+ author = {Timo Zinsser and Benjamin Keck},
+ title = {Systematic Performance Optimization of Cone-Beam Back-Projection on the Kepler Architecture},
+ booktitle = {Proceedings of the 12th Fully Three-Dimensional Image Reconstruction in Radiology and Nuclear Medicine},
+ pages = {225--228},
+ year = {2013}
+}
+
+@inproceedings{papenhausen2013,
+ author = {E. Papenhausen and K. Mueller},
+ title = {Rapid rabbit: Highly optimized GPU accelerated cone-beam CT reconstruction},
+ booktitle = {IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC)},
+ year = {2013},
+ doi = {10.1109/NSSMIC.2013.6829126}
+}
+
+
+@article{hudspeth2013high,
+ title = {High speed synchrotron x-ray phase contrast imaging of dynamic material response to split Hopkinson bar loading},
+ author = {Hudspeth, M and Claus, B and Dubelman, S and Black, J and Mondal, A and Parab, N and Funnell, C and Hai, F and Qi, ML and Fezzaa, K and others},
+ journal = {Review of Scientific Instruments},
+ volume = {84},
+ number = {2},
+ pages = {025102},
+ year = {2013},
+ publisher = {AIP Publishing}
+}
+
+@article{sauter2013python,
+ author = {Sauter, Nicholas K. and Hattne, Johan and Grosse-Kunstleve, Ralf W. and Echols, Nathaniel},
+ title = {{New Python-based methods for data processing}},
+ journal = {Acta Crystallographica Section D},
+ year = {2013},
+ month = {Jul},
+ volume = {69},
+ number = {7},
+ pages = {1274--1282},
+ doi = {10.1107/S0907444913000863},
+}
+
+@inproceedings{palenstijn2013astra,
+ author = {Palenstij, W. J. and Batenburg, K. J. and Sijbers, J.},
+ title = {{The ASTRA Tomography Toolbox}},
+ booktitle = {Proc. of 13th Int. Conf. on Computational and Mathematical Methods in Science and Engineering},
+ year = {2013},
+ pages = {1139--1145},
+ volume = {3},
+}
+
+@inproceedings{liu2013largevolumes,
+ author = {Liu, X. and Boons, S. and Sasov, A.},
+ title = {{Strategies for GPU-based conebeam CT reconstruction for very large data volumes}},
+ booktitle = {Proc. of 12th Int. Meeting Fully 3D Image Reconstruction in Radiology and Nuclear Medecine},
+ year = {2013},
+ pages = {529--532},
+}
+
+@article{maier2013conrad,
+ author = {Maier, A. and Hofmann, H. and Berger, M. and Fischer, P. and Schwemmer, C. and Wu, H. and Mueller, K. and Hornegger, J. and Choi, J. and Riess, C. and Keil, A. and Fahrig, R.},
+ title = {{CONRAD--A software framework for cone-beam imaging in radiology}},
+ journal = {Medical Physics},
+ year = {2013},
+ volume = {40},
+ number = {2},
+ pages = {111914-1--111914-8},
+ doi = {10.1118/1.4824926},
+}
+
+@article{marone2012regridding,
+ author = {Marone, F. and Stampanoni, M.},
+ title = {{Regridding reconstruction algorithm for real-time tomographic imaging}},
+ journal = j_sync_rad,
+ year = {2012},
+ volume = {19},
+ pages = {1029--1037},
+ doi = {10.1107/S0909049512032864},
+}
+
+@inproceedings{xiao2012x,
+ title = {X-ray fast tomography and its applications in dynamical phenomena studies in geosciences at Advanced Photon Source},
+ author = {Xiao, Xianghui and Fusseis, Florian and De Carlo, Francesco},
+ booktitle = {Proc. SPIE},
+ volume = {8506},
+ pages = {85060K},
+ year = {2012}
+}
+
+@article{yeager2012high,
+ title = {High-speed synchrotron X-ray phase contrast imaging for analysis of low-Z composite microstructure},
+ author = {Yeager, JD and Luo, SN and Jensen, BJ and Fezzaa, K and Montgomery, DS and Hooks, DE},
+ journal = {Composites Part A: Applied Science and Manufacturing},
+ volume = {43},
+ number = {6},
+ pages = {885--892},
+ year = {2012},
+ publisher = {Elsevier}
+}
+
+@article{dubach2012compiling,
+ author = {Dubach, Christophe and Cheng, Perry and Rabbah, Rodric and Bacon, David F. and Fink, Stephen J.},
+ title = {Compiling a High-level Language for GPUs: (via Language Support for Architectures and Compilers)},
+ journal = {SIGPLAN Not.},
+ volume = {47},
+ number = {6},
+ month = {6},
+ year = {2012},
+ issn = {0362-1340},
+ pages = {1--12},
+ doi = {10.1145/2345156.2254066},
+ publisher = acm,
+ address = acm_adr,
+}
+
+@article{doggett2012texture,
+ title = {Texture Caches},
+ author = {M. Doggett},
+ journal = {IEEE Micro},
+ volume = {32},
+ number = {3},
+ pages = {136-141},
+ year = {2012},
+ doi = {10.1109/MM.2012.44}
+}
+
+@article{hormati2011sponge,
+ author = {Hormati, Amir H. and Samadi, Mehrzad and Woh, Mark and Mudge,
+ Trevor and Mahlke, Scott},
+ title = {Sponge: Portable Stream Programming on Graphics Engines},
+ journal = {SIGARCH Comput. Archit. News},
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+ month = {3},
+ year = {2011},
+ issn = {0163-5964},
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+ numpages = {12},
+ doi = {http://doi.acm.org/10.1145/1961295.1950409},
+ publisher = acm,
+ address = acm_adr,
+}
+@article{mader2011highthroughput,
+ author = {Mader, Kevin and Marone, Federica and Hinterm{\"{u}}ller, Christoph and Mikuljan, Gordan and Isenegger, Andreas and Stampanoni, Marco},
+ title = {{High-throughput full-automatic synchrotron-based tomographic microscopy}},
+ journal = j_sync_rad,
+ year = {2011},
+ month = {Mar},
+ volume = {18},
+ number = {2},
+ pages = {117--124},
+ doi = {10.1107/S0909049510047370},
+}
+
+@article{palenstijn2011art,
+ author = {Palenstij, W. J. and Batenburg, K. J. and Sijbers, J.},
+ title = {{Performance improvements for iterative electron tomography reconstruction using graphics processing units (GPUs)}},
+ journal = {Journal of Structural Biology},
+ year = {2011},
+ volume = {176},
+ number = {2},
+ pages = {250--253},
+ doi = {10.1016/j.jsb.2011.07.017},
+}
+
+@article{zhang2011gstream,
+ author = { Zhang, Y. and Mueller, F. },
+ title = {{GStream}: A General-Purpose Data Streaming Framework on {GPU}
+ Clusters},
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+ volume = {0},
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+ year = {2011},
+ pages = {245--254},
+ doi = {10.1109/ICPP.2011.22},
+ publisher = ieee_cs,
+ address = ieee_cs_ca_adr,
+}
+
+@article{moura2009coroutines,
+ author = {Moura, Ana L\'{u}cia De and Ierusalimschy, Roberto},
+ title = {Revisiting Coroutines},
+ journal = {ACM Trans. Program. Lang. Syst.},
+ volume = {31},
+ number = {2},
+ month = feb,
+ year = {2009},
+ issn = {0164-0925},
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+ doi = {10.1145/1462166.1462167},
+ publisher = acm,
+ address = acm_adr,
+}
+
+@article{rack2009,
+ title = {The micro-imaging station of the TopoTomo beamline at the ANKA synchrotron light source},
+ author = {Rack, A and Weitkamp, T and Bauer Trabelsi, S and Modregger, P and Cecilia, A and dos Santos Rolo, T and Rack, T and Haas, D and Simon, R and Heldele, R and others},
+ journal = {Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms},
+ volume = {267},
+ number = {11},
+ pages = {1978--1988},
+ year = {2009},
+ publisher = {Elsevier}
+}
+
+@article{momose2009,
+ title = {High-speed X-ray phase imaging and X-ray phase tomography with Talbot interferometer and white synchrotron radiation},
+ author = {Momose, Atsushi and Yashiro, Wataru and Maikusa, Hirohide and Takeda, Yoshihiro},
+ journal = {Optics express},
+ volume = {17},
+ number = {15},
+ pages = {12540--12545},
+ year = {2009},
+ publisher = {Optical Society of America},
+}
+
+@article{garcia2008,
+ author = {Garcia-Moreno, F. and Rack, A. and Helfen, L. and Baumbach, T. and Zabler, S. and Babcsan, N. and Banhart, J. and Martin, T. and Ponchut, C. and Di Michiel, M.},
+ journal = {Applied Physics Letters},
+ title = {Fast processes in liquid metal foams investigated by high-speed synchrotron x-ray microradioscopy},
+ year = {2008},
+ month = {},
+ volume = {92},
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+ doi = {10.1063/1.2905748},
+ ISSN = {0003-6951},
+}
+
+@article{owens2008,
+ title = {GPU computing},
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+ journal = {Proceedings of the IEEE},
+ volume = {96},
+ number = {5},
+ pages = {879--899},
+ year = {2008},
+ publisher = {IEEE}
+}
+
+@article{withers2007nanotomography,
+ author = {Philip J. Withers},
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+ year = {2007},
+ doi = {10.1016/S1369-7021(07)70305-X}
+}
+
+@article{helfen2007,
+ title = {Synchrotron-radiation computed laminography for high-resolution three-dimensional imaging of flat devices},
+ author = {Helfen, Lukas and Myagotin, Anton and Rack, Alexander and Pernot, Petra and Mikul{\'\i}k, Petr and Di Michiel, Marco and Baumbach, Tilo},
+ journal = {physica status solidi (a)},
+ volume = {204},
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+ year = {2007},
+ publisher = {Wiley Online Library}
+}
+
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+ title = {Fast tomography using quasi-monochromatic undulator radiation},
+ author = {Uesugi, K. and Sera, T. and Yagi, N.},
+ journal = {Journal of synchrotron radiation},
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+ number = {5},
+ pages = {403--407},
+ year = {2006},
+ publisher = {International Union of Crystallography}
+}
+
+@article{michiel2005,
+ title = {Fast microtomography using high energy synchrotron radiation},
+ author = {Di Michiel, Marco and Merino, Jose Manuel and Fernandez-Carreiras, David and Buslaps, Thomas and Honkim{\"a}ki, Veijo and Falus, Peter and Martins, Thierry and Svensson, Olof},
+ journal = {Review of Scientific Instruments},
+ volume = {76},
+ number = {4},
+ pages = {043702},
+ year = {2005},
+ publisher = {AIP Publishing}
+}
+
+@article{arzt2005automation,
+ author = {Steffi Arzt and Antonia Beteva and Florent Cipriani and Solange
+ Delageniere and Franck Felisaz and Gabriele Förstner and Elspeth Gordon and
+ Ludovic Launer and Bernard Lavault and Gordon Leonard and Trevor Mairs and
+ Andrew McCarthy and Joanne McCarthy and Sean McSweeney and Jens Meyer and
+ Edward Mitchell and Stephanie Monaco and Didier Nurizzo and Raimond
+ Ravelli and Vicente Rey and William Shepard and Darren Spruce and Olof
+ Svensson and Pascal Theveneau},
+ title = {Automation of macromolecular crystallography beamlines },
+ journal = {Progress in Biophysics and Molecular Biology },
+ volume = {89},
+ number = {2},
+ pages = {124--152},
+ year = {2005},
+ issn = {0079-6107},
+ doi = {10.1016/j.pbiomolbio.2004.09.003},
+}
+
+@article{hentschel2005,
+ title = {Direct iterative reconstruction of computed tomography trajectories (DIRECT)},
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+}
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+@inproceedings{gotz2003tango,
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+}
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+ journal = {Review of Scientific Instruments},
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+ number = {4},
+ pages = {2062--2068},
+ year = {2001},
+ publisher = {AIP Publishing}
+}
+
+@book{natterer2001mathematical,
+ title = {Mathematical Methods in Image Reconstruction},
+ author = {Natterer, F. and W{\"u}bbeling, F.},
+ isbn = {9780898716221},
+ lccn = {00053804},
+ series = {Mathematical Modeling and Computation},
+ year = {2001},
+ publisher = {Society for Industrial and Applied Mathematics}
+}
+@misc{hey1999fft,
+ author = {Adrian Hey},
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+}
+
+
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+ volume = {99},
+ year = {1999}
+}
+
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+ title = {Fast implementations of algebraic methods for three-dimensional reconstruction from cone-beam data},
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+ journal = {Medical Imaging, IEEE Transactions on},
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+ year = {1999},
+ publisher = {IEEE}
+}
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+ author = {Klaus Mueller},
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+ year = {1998},
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+}
+
+@techreport{danielsson1997,
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+}
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+
diff --git a/wp.bib b/wp.bib
new file mode 100644
index 0000000..97273fe
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+@misc{nvidia2017cudapg,
+ howpublished = {Manual},
+ organization = {NVIDIA},
+ title = {CUDA C Programming Guide},
+ year = {2017}
+}
+
+@misc{nvidia2017gpudirect,
+ howpublished = {Manual},
+ organization = {NVIDIA},
+ title = {Developing a Linux kernel module using RDMA for GPUDirect},
+ year = {2017}
+}
+
+@misc{ryan2016gpuboost,
+ author = {Ryan Smith},
+ title = {The NVIDIA GeForce GTX 1080 \& GTX 1070 Founders Editions Review: Kicking Off the FinFET Generation},
+ publisher = {Anandtech},
+ url = {https://www.anandtech.com/show/10325/},
+ year = {2016}
+}
+
+
+@misc{nvidia2013mpi,
+ howpublished = {Blog post},
+ author = {Jiri Kraus},
+ organization = {NVIDIA},
+ type = {Blog},
+ title = {An Introduction to CUDA-Aware MPI},
+ year = {2013},
+ url = {https://devblogs.nvidia.com/parallelforall/introduction-cuda-aware-mpi/}
+}
+
+@misc{amd2013openclpg,
+ howpublished = {Manual},
+ organization = {AMD},
+ title = {AMD Accelerated Parallel Processing OpenCL Programming Guide},
+ year = {2013}
+}
+
+@misc{amd2011directgma,
+ howpublished = {Manual},
+ author = {Brian Sumner},
+ organization = {AMD},
+ title = {OpenCL Extension: AMD Bus Addressable Memory},
+ year = {2011},
+ url = {https://www.khronos.org/registry/OpenCL/extensions/amd/cl_amd_bus_addressable_memory.txt}
+}
+
+@misc{intel2011openclpg,
+ howpublished = {Manual},
+ organization = {Intel},
+ title = {Writing Optimal OpenCL Code with Intel OpenCL SDK: Performance Guide},
+ year = {2011}
+}
+
+@misc{nvidia2014transpose,
+ howpublished = {Manual},
+ organization = {NVIDIA},
+ author = {Ruetsch, G. and Micikevicius, P. and Scudiero, T.},
+ title = {Optimizing Matrix Transpose in CUDA},
+ year = {2014}
+}
+
+@article{nvidia2008gt200,
+ title = {NVIDIA Tesla: A Unified Graphics and Computing Architecture},
+ author = {Lindholm, Erik and Nickolls, John and Oberman, Stuart and Montrym, John},
+ journal = {Hot Chips},
+ volume = {19},
+ pages = {39--55},
+ year = {2008}
+}
+
+@misc{nvidia2009gf110,
+ howpublished = {White Paper},
+ organization = {NVIDIA},
+ title = {NVIDIA's next generation CUDA compute architecture: Fermi},
+ year = {2009}
+}
+
+@misc{nvidia2012gk104,
+ howpublished = {White Paper},
+ organization = {NVIDIA},
+ title = {NVIDIA GeForce GTX 680},
+ year = {2012}
+}
+
+@misc{nvidia2012gk110,
+ howpublished = {White Paper},
+ organization = {NVIDIA},
+ title = {NVIDIA's next generation CUDA compute architecture: Kepler GK110},
+ year = {2012}
+}
+
+@misc{nvidia2014gm204,
+ howpublished = {White Paper},
+ organization = {NVIDIA},
+ title = {NVIDIA GeForce GTX 980},
+ year = {2014}
+}
+
+
+@misc{nvidia2016gp104,
+ howpublished = {White Paper},
+ organization = {NVIDIA},
+ title = {NVIDIA GeForce GTX 1080},
+ year = {2016}
+}
+
+@misc{nvidia2016gp100,
+ howpublished = {White Paper},
+ organization = {NVIDIA},
+ title = {NVIDIA Tesla P100},
+ year = {2016}
+}
+
+@misc{nvidia2017v100,
+ howpublished = {White Paper},
+ organization = {NVIDIA},
+ title = {NVIDIA Tesla V100 GPU Architecture},
+ year = {2017}
+}
+
+@misc{amd2012gcn,
+ howpublished = {White Paper},
+ organization = {AMD},
+ title = {AMD Graphics Core Next (GCN) Architecture},
+ year = {2012}
+}
+
+@misc{amd2008vliw,
+ howpublished = {White Paper},
+ organization = {AMD},
+ title = {Anatomy of AMD’s TeraScale Graphics Engine},
+ year = {2008}
+}
+
+@online{opencl,
+ author = {Khronos},
+ title = {OpenCL: The open standard for parallel programming of heterogeneous systems},
+ year = {2014},
+ url = {http://www.khronos.org/opencl}
+}
+
+@misc{khronos:opencl1.2,
+ title = {The {OpenCL} Specification},
+ author = {Khronos},
+ editor = {Munshi, Aaftab},
+ number = {Version 1.2, Revision 19},
+ year = {2012},
+ url = {http://www.khronos.org/opencl},
+}
+
+@online{pco,
+ author = {PCO},
+ title = {CCD and CMOS camera systems},
+ url = {http://www.pco.de},
+ year = {2014}
+}
+
+@misc{pco2014dimax,
+ howpublished = {User Manual},
+ organization = {PCO AG},
+ title = {PCO.dimax family},
+ year = {2014},
+ url = {https://www.pco.de/fileadmin/user_upload/pco-manuals/pco.dimax_CW3_manual.pdf}
+}
+
+@book{ieee754,
+ author = {IEEE Task P754},
+ title = {IEEE standard for binary floating-point arithmetic},
+ publisher= {Institute of Electrical and Electronics Engineers},
+ address = {New York},
+ note = {Note: Standard 754--1985},
+ pages = {20},
+ ISBN = {1-55937-653-8},
+ year = {1985},
+ url = {http://ieeexplore.ieee.org/iel1/2355/1316/00030711.pd}
+}
+