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authorWillem Jan Palenstijn <Willem.Jan.Palenstijn@cwi.nl>2018-01-09 14:09:40 +0100
committerWillem Jan Palenstijn <Willem.Jan.Palenstijn@cwi.nl>2018-01-09 14:09:40 +0100
commitde27e439a0c59fade175fba4e0b4a1e0c84b933d (patch)
tree8d724e10b35291f5bfd63174eeeca95e52a863df /src
parent324611ce98a82944def875e61cb93dd98ced9c79 (diff)
parent84da1d5e27abadf28e97695e88494c58bf1c2697 (diff)
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Merge branch 'parallel_vec'
Diffstat (limited to 'src')
-rw-r--r--src/ConeProjectionGeometry3D.cpp2
-rw-r--r--src/CudaFDKAlgorithm3D.cpp2
-rw-r--r--src/CudaFilteredBackProjectionAlgorithm.cpp219
-rw-r--r--src/CudaForwardProjectionAlgorithm.cpp66
-rw-r--r--src/CudaReconstructionAlgorithm2D.cpp63
-rw-r--r--src/FanFlatBeamLineKernelProjector2D.cpp2
-rw-r--r--src/FanFlatBeamStripKernelProjector2D.cpp2
-rw-r--r--src/FanFlatProjectionGeometry2D.cpp18
-rw-r--r--src/Float32Data2D.cpp2
-rw-r--r--src/GeometryUtil2D.cpp175
-rw-r--r--src/ParallelBeamBlobKernelProjector2D.cpp93
-rw-r--r--src/ParallelBeamLineKernelProjector2D.cpp110
-rw-r--r--src/ParallelBeamLinearKernelProjector2D.cpp4
-rw-r--r--src/ParallelBeamStripKernelProjector2D.cpp102
-rw-r--r--src/ParallelProjectionGeometry2D.cpp38
-rw-r--r--src/ParallelVecProjectionGeometry2D.cpp233
-rw-r--r--src/ProjectionGeometry2D.cpp26
-rw-r--r--src/Projector2D.cpp5
-rw-r--r--src/VolumeGeometry2D.cpp20
19 files changed, 678 insertions, 504 deletions
diff --git a/src/ConeProjectionGeometry3D.cpp b/src/ConeProjectionGeometry3D.cpp
index 217a916..e8b95f1 100644
--- a/src/ConeProjectionGeometry3D.cpp
+++ b/src/ConeProjectionGeometry3D.cpp
@@ -225,7 +225,7 @@ CVector3D CConeProjectionGeometry3D::getProjectionDirection(int _iProjectionInde
#undef ROTATE
- CVector3D ret(fDetX - fSrcX, fDetY - fSrcY, fDetZ - fDetZ);
+ CVector3D ret(fDetX - fSrcX, fDetY - fSrcY, fDetZ - fSrcZ);
return ret;
}
diff --git a/src/CudaFDKAlgorithm3D.cpp b/src/CudaFDKAlgorithm3D.cpp
index e7c65be..f94a24f 100644
--- a/src/CudaFDKAlgorithm3D.cpp
+++ b/src/CudaFDKAlgorithm3D.cpp
@@ -156,7 +156,7 @@ bool CCudaFDKAlgorithm3D::initialize(const Config& _cfg)
const CProjectionGeometry3D* projgeom = m_pSinogram->getGeometry();
const CProjectionGeometry2D* filtgeom = pFilterData->getGeometry();
int iPaddedDetCount = calcNextPowerOfTwo(2 * projgeom->getDetectorColCount());
- int iHalfFFTSize = calcFFTFourSize(iPaddedDetCount);
+ int iHalfFFTSize = astraCUDA::calcFFTFourierSize(iPaddedDetCount);
if(filtgeom->getDetectorCount()!=iHalfFFTSize || filtgeom->getProjectionAngleCount()!=projgeom->getProjectionCount()){
ASTRA_ERROR("Filter size does not match required size (%i angles, %i detectors)",projgeom->getProjectionCount(),iHalfFFTSize);
return false;
diff --git a/src/CudaFilteredBackProjectionAlgorithm.cpp b/src/CudaFilteredBackProjectionAlgorithm.cpp
index a5d7b93..f3cca12 100644
--- a/src/CudaFilteredBackProjectionAlgorithm.cpp
+++ b/src/CudaFilteredBackProjectionAlgorithm.cpp
@@ -32,6 +32,7 @@ along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
#include "astra/AstraObjectManager.h"
#include "astra/CudaProjector2D.h"
#include "../cuda/2d/astra.h"
+#include "../cuda/2d/fbp.h"
#include "astra/Logging.h"
@@ -43,8 +44,7 @@ string CCudaFilteredBackProjectionAlgorithm::type = "FBP_CUDA";
CCudaFilteredBackProjectionAlgorithm::CCudaFilteredBackProjectionAlgorithm()
{
m_bIsInitialized = false;
- CReconstructionAlgorithm2D::_clear();
- m_pFBP = 0;
+ CCudaReconstructionAlgorithm2D::_clear();
m_pfFilter = NULL;
m_fFilterParameter = -1.0f;
m_fFilterD = 1.0f;
@@ -52,35 +52,8 @@ CCudaFilteredBackProjectionAlgorithm::CCudaFilteredBackProjectionAlgorithm()
CCudaFilteredBackProjectionAlgorithm::~CCudaFilteredBackProjectionAlgorithm()
{
- if(m_pfFilter != NULL)
- {
- delete [] m_pfFilter;
- m_pfFilter = NULL;
- }
-
- if(m_pFBP != NULL)
- {
- delete m_pFBP;
- m_pFBP = NULL;
- }
-}
-
-void CCudaFilteredBackProjectionAlgorithm::initializeFromProjector()
-{
- m_iPixelSuperSampling = 1;
- m_iGPUIndex = -1;
-
- // Projector
- CCudaProjector2D* pCudaProjector = dynamic_cast<CCudaProjector2D*>(m_pProjector);
- if (!pCudaProjector) {
- if (m_pProjector) {
- ASTRA_WARN("non-CUDA Projector2D passed to FBP_CUDA");
- }
- } else {
- m_iPixelSuperSampling = pCudaProjector->getVoxelSuperSampling();
- m_iGPUIndex = pCudaProjector->getGPUIndex();
- }
-
+ delete[] m_pfFilter;
+ m_pfFilter = NULL;
}
bool CCudaFilteredBackProjectionAlgorithm::initialize(const Config& _cfg)
@@ -94,51 +67,24 @@ bool CCudaFilteredBackProjectionAlgorithm::initialize(const Config& _cfg)
clear();
}
- // Projector
- XMLNode node = _cfg.self.getSingleNode("ProjectorId");
- CCudaProjector2D* pCudaProjector = 0;
- if (node) {
- int id = node.getContentInt();
- CProjector2D *projector = CProjector2DManager::getSingleton().get(id);
- pCudaProjector = dynamic_cast<CCudaProjector2D*>(projector);
- if (!pCudaProjector) {
- ASTRA_WARN("non-CUDA Projector2D passed");
- }
- }
- CC.markNodeParsed("ProjectorId");
-
-
- // sinogram data
- node = _cfg.self.getSingleNode("ProjectionDataId");
- ASTRA_CONFIG_CHECK(node, "CudaFBP", "No ProjectionDataId tag specified.");
- int id = node.getContentInt();
- m_pSinogram = dynamic_cast<CFloat32ProjectionData2D*>(CData2DManager::getSingleton().get(id));
- CC.markNodeParsed("ProjectionDataId");
+ m_bIsInitialized = CCudaReconstructionAlgorithm2D::initialize(_cfg);
+ if (!m_bIsInitialized)
+ return false;
- // reconstruction data
- node = _cfg.self.getSingleNode("ReconstructionDataId");
- ASTRA_CONFIG_CHECK(node, "CudaFBP", "No ReconstructionDataId tag specified.");
- id = node.getContentInt();
- m_pReconstruction = dynamic_cast<CFloat32VolumeData2D*>(CData2DManager::getSingleton().get(id));
- CC.markNodeParsed("ReconstructionDataId");
// filter type
- node = _cfg.self.getSingleNode("FilterType");
+ XMLNode node = _cfg.self.getSingleNode("FilterType");
if (node)
- {
m_eFilter = _convertStringToFilter(node.getContent().c_str());
- }
else
- {
m_eFilter = FILTER_RAMLAK;
- }
CC.markNodeParsed("FilterType");
// filter
node = _cfg.self.getSingleNode("FilterSinogramId");
if (node)
{
- id = node.getContentInt();
+ int id = node.getContentInt();
const CFloat32ProjectionData2D * pFilterData = dynamic_cast<CFloat32ProjectionData2D*>(CData2DManager::getSingleton().get(id));
m_iFilterWidth = pFilterData->getGeometry()->getDetectorCount();
int iFilterProjectionCount = pFilterData->getGeometry()->getProjectionAngleCount();
@@ -187,20 +133,9 @@ bool CCudaFilteredBackProjectionAlgorithm::initialize(const Config& _cfg)
initializeFromProjector();
- // Deprecated options
- m_iPixelSuperSampling = (int)_cfg.self.getOptionNumerical("PixelSuperSampling", m_iPixelSuperSampling);
- CC.markOptionParsed("PixelSuperSampling");
- // GPU number
- m_iGPUIndex = (int)_cfg.self.getOptionNumerical("GPUindex", -1);
- m_iGPUIndex = (int)_cfg.self.getOptionNumerical("GPUIndex", m_iGPUIndex);
- CC.markOptionParsed("GPUIndex");
- if (!_cfg.self.hasOption("GPUIndex"))
- CC.markOptionParsed("GPUindex");
-
-
- m_pFBP = new AstraFBP;
- m_bAstraFBPInit = false;
+ m_pAlgo = new astraCUDA::FBP();
+ m_bAlgoInit = false;
return check();
}
@@ -225,9 +160,8 @@ bool CCudaFilteredBackProjectionAlgorithm::initialize(CFloat32ProjectionData2D *
// success
m_bIsInitialized = true;
- m_pFBP = new AstraFBP;
-
- m_bAstraFBPInit = false;
+ m_pAlgo = new astraCUDA::FBP();
+ m_bAlgoInit = false;
if(_pfFilter != NULL)
{
@@ -255,107 +189,26 @@ bool CCudaFilteredBackProjectionAlgorithm::initialize(CFloat32ProjectionData2D *
return check();
}
-void CCudaFilteredBackProjectionAlgorithm::run(int _iNrIterations /* = 0 */)
-{
- // check initialized
- ASTRA_ASSERT(m_bIsInitialized);
-
- if (!m_bAstraFBPInit) {
-
- const CVolumeGeometry2D& volgeom = *m_pReconstruction->getGeometry();
- const CParallelProjectionGeometry2D* parprojgeom = dynamic_cast<CParallelProjectionGeometry2D*>(m_pSinogram->getGeometry());
- const CFanFlatProjectionGeometry2D* fanprojgeom = dynamic_cast<CFanFlatProjectionGeometry2D*>(m_pSinogram->getGeometry());
-
- bool ok = true;
-
- // TODO: non-square pixels?
- ok &= m_pFBP->setReconstructionGeometry(volgeom.getGridColCount(),
- volgeom.getGridRowCount(),
- volgeom.getPixelLengthX());
- int iDetectorCount;
- if (parprojgeom) {
-
- float *offsets, *angles, detSize, outputScale;
-
- ok = convertAstraGeometry(&volgeom, parprojgeom, offsets, angles, detSize, outputScale);
-
-
- ok &= m_pFBP->setProjectionGeometry(parprojgeom->getProjectionAngleCount(),
- parprojgeom->getDetectorCount(),
- angles,
- parprojgeom->getDetectorWidth());
- iDetectorCount = parprojgeom->getDetectorCount();
-
- // TODO: Are detSize and outputScale handled correctly?
- if (offsets)
- ok &= m_pFBP->setTOffsets(offsets);
- ASTRA_ASSERT(ok);
-
- delete[] offsets;
- delete[] angles;
-
- } else if (fanprojgeom) {
-
- astraCUDA::SFanProjection* projs;
- float outputScale;
-
- // FIXME: Implement this, and clean up the interface to AstraFBP.
- if (abs(volgeom.getWindowMinX() + volgeom.getWindowMaxX()) > 0.00001 * volgeom.getPixelLengthX()) {
- // Off-center volume geometry isn't supported yet
- ASTRA_ASSERT(false);
- }
- if (abs(volgeom.getWindowMinY() + volgeom.getWindowMaxY()) > 0.00001 * volgeom.getPixelLengthY()) {
- // Off-center volume geometry isn't supported yet
- ASTRA_ASSERT(false);
- }
-
- ok = convertAstraGeometry(&volgeom, fanprojgeom, projs, outputScale);
-
- // CHECKME: outputScale?
-
- ok &= m_pFBP->setFanGeometry(fanprojgeom->getProjectionAngleCount(),
- fanprojgeom->getDetectorCount(),
- projs,
- fanprojgeom->getProjectionAngles(),
- fanprojgeom->getOriginSourceDistance(),
- fanprojgeom->getOriginDetectorDistance(),
-
- fanprojgeom->getDetectorWidth(),
- m_bShortScan);
-
- iDetectorCount = fanprojgeom->getDetectorCount();
-
- delete[] projs;
- } else {
- assert(false);
- }
-
- ok &= m_pFBP->setPixelSuperSampling(m_iPixelSuperSampling);
-
- ASTRA_ASSERT(ok);
-
- ok &= m_pFBP->init(m_iGPUIndex);
- ASTRA_ASSERT(ok);
+void CCudaFilteredBackProjectionAlgorithm::initCUDAAlgorithm()
+{
+ CCudaReconstructionAlgorithm2D::initCUDAAlgorithm();
- ok &= m_pFBP->setSinogram(m_pSinogram->getDataConst(), iDetectorCount);
- ASTRA_ASSERT(ok);
+ astraCUDA::FBP* pFBP = dynamic_cast<astraCUDA::FBP*>(m_pAlgo);
- ok &= m_pFBP->setFilter(m_eFilter, m_pfFilter, m_iFilterWidth, m_fFilterD, m_fFilterParameter);
+ bool ok = pFBP->setFilter(m_eFilter, m_pfFilter, m_iFilterWidth, m_fFilterD, m_fFilterParameter);
+ if (!ok) {
+ ASTRA_ERROR("CCudaFilteredBackProjectionAlgorithm: Failed to set filter");
ASTRA_ASSERT(ok);
-
- m_bAstraFBPInit = true;
}
- bool ok = m_pFBP->run();
- ASTRA_ASSERT(ok);
-
- const CVolumeGeometry2D& volgeom = *m_pReconstruction->getGeometry();
- ok &= m_pFBP->getReconstruction(m_pReconstruction->getData(), volgeom.getGridColCount());
-
- ASTRA_ASSERT(ok);
+ ok &= pFBP->setShortScan(m_bShortScan);
+ if (!ok) {
+ ASTRA_ERROR("CCudaFilteredBackProjectionAlgorithm: Failed to set short-scan mode");
+ }
}
+
bool CCudaFilteredBackProjectionAlgorithm::check()
{
// check pointers
@@ -382,28 +235,6 @@ bool CCudaFilteredBackProjectionAlgorithm::check()
return true;
}
-static int calcNextPowerOfTwo(int _iValue)
-{
- int iOutput = 1;
-
- while(iOutput < _iValue)
- {
- iOutput *= 2;
- }
-
- return iOutput;
-}
-
-int CCudaFilteredBackProjectionAlgorithm::calcIdealRealFilterWidth(int _iDetectorCount)
-{
- return calcNextPowerOfTwo(_iDetectorCount);
-}
-
-int CCudaFilteredBackProjectionAlgorithm::calcIdealFourierFilterWidth(int _iDetectorCount)
-{
- return (calcNextPowerOfTwo(_iDetectorCount) / 2 + 1);
-}
-
static bool stringCompareLowerCase(const char * _stringA, const char * _stringB)
{
int iCmpReturn = 0;
diff --git a/src/CudaForwardProjectionAlgorithm.cpp b/src/CudaForwardProjectionAlgorithm.cpp
index bac1251..f4cafe6 100644
--- a/src/CudaForwardProjectionAlgorithm.cpp
+++ b/src/CudaForwardProjectionAlgorithm.cpp
@@ -220,56 +220,48 @@ void CCudaForwardProjectionAlgorithm::run(int)
// check initialized
assert(m_bIsInitialized);
- CVolumeGeometry2D* pVolGeom = m_pVolume->getGeometry();
- const CParallelProjectionGeometry2D* parProjGeom = dynamic_cast<CParallelProjectionGeometry2D*>(m_pSinogram->getGeometry());
- const CFanFlatProjectionGeometry2D* fanProjGeom = dynamic_cast<CFanFlatProjectionGeometry2D*>(m_pSinogram->getGeometry());
- const CFanFlatVecProjectionGeometry2D* fanVecProjGeom = dynamic_cast<CFanFlatVecProjectionGeometry2D*>(m_pSinogram->getGeometry());
+ bool ok;
- bool ok = false;
- if (parProjGeom) {
+ const CVolumeGeometry2D* pVolGeom = m_pVolume->getGeometry();
+ const CProjectionGeometry2D* pProjGeom = m_pSinogram->getGeometry();
+ astraCUDA::SDimensions dims;
- float *offsets, *angles, detSize, outputScale;
- ok = convertAstraGeometry(pVolGeom, parProjGeom, offsets, angles, detSize, outputScale);
+ ok = convertAstraGeometry_dims(pVolGeom, pProjGeom, dims);
- ASTRA_ASSERT(ok); // FIXME
+ if (!ok)
+ return;
- // FIXME: Output scaling
+ astraCUDA::SParProjection* pParProjs = 0;
+ astraCUDA::SFanProjection* pFanProjs = 0;
+ float fOutputScale = 1.0f;
- ok = astraCudaFP(m_pVolume->getDataConst(), m_pSinogram->getData(),
- pVolGeom->getGridColCount(), pVolGeom->getGridRowCount(),
- parProjGeom->getProjectionAngleCount(),
- parProjGeom->getDetectorCount(),
- angles, offsets, detSize,
- m_iDetectorSuperSampling, 1.0f * outputScale, m_iGPUIndex);
-
- delete[] offsets;
- delete[] angles;
+ ok = convertAstraGeometry(pVolGeom, pProjGeom, pParProjs, pFanProjs, fOutputScale);
+ if (!ok)
+ return;
- } else if (fanProjGeom || fanVecProjGeom) {
+ if (pParProjs) {
+ assert(!pFanProjs);
- astraCUDA::SFanProjection* projs;
- float outputScale;
+ ok = astraCudaFP(m_pVolume->getDataConst(), m_pSinogram->getData(),
+ pVolGeom->getGridColCount(), pVolGeom->getGridRowCount(),
+ pProjGeom->getProjectionAngleCount(),
+ pProjGeom->getDetectorCount(),
+ pParProjs,
+ m_iDetectorSuperSampling, 1.0f * fOutputScale, m_iGPUIndex);
- if (fanProjGeom) {
- ok = convertAstraGeometry(pVolGeom, fanProjGeom, projs, outputScale);
- } else {
- ok = convertAstraGeometry(pVolGeom, fanVecProjGeom, projs, outputScale);
- }
+ delete[] pParProjs;
- ASTRA_ASSERT(ok);
+ } else {
+ assert(pFanProjs);
ok = astraCudaFanFP(m_pVolume->getDataConst(), m_pSinogram->getData(),
pVolGeom->getGridColCount(), pVolGeom->getGridRowCount(),
- m_pSinogram->getGeometry()->getProjectionAngleCount(),
- m_pSinogram->getGeometry()->getDetectorCount(),
- projs,
- m_iDetectorSuperSampling, outputScale, m_iGPUIndex);
-
- delete[] projs;
-
- } else {
+ pProjGeom->getProjectionAngleCount(),
+ pProjGeom->getDetectorCount(),
+ pFanProjs,
+ m_iDetectorSuperSampling, fOutputScale, m_iGPUIndex);
- ASTRA_ASSERT(false);
+ delete[] pFanProjs;
}
diff --git a/src/CudaReconstructionAlgorithm2D.cpp b/src/CudaReconstructionAlgorithm2D.cpp
index 96f52f0..f37647c 100644
--- a/src/CudaReconstructionAlgorithm2D.cpp
+++ b/src/CudaReconstructionAlgorithm2D.cpp
@@ -249,69 +249,14 @@ bool CCudaReconstructionAlgorithm2D::setupGeometry()
ok = m_pAlgo->setGPUIndex(m_iGPUIndex);
if (!ok) return false;
- astraCUDA::SDimensions dims;
-
const CVolumeGeometry2D& volgeom = *m_pReconstruction->getGeometry();
+ const CProjectionGeometry2D& projgeom = *m_pSinogram->getGeometry();
- // TODO: non-square pixels?
- dims.iVolWidth = volgeom.getGridColCount();
- dims.iVolHeight = volgeom.getGridRowCount();
- float fPixelSize = volgeom.getPixelLengthX();
-
- dims.iRaysPerDet = m_iDetectorSuperSampling;
- dims.iRaysPerPixelDim = m_iPixelSuperSampling;
-
-
- const CParallelProjectionGeometry2D* parProjGeom = dynamic_cast<CParallelProjectionGeometry2D*>(m_pSinogram->getGeometry());
- const CFanFlatProjectionGeometry2D* fanProjGeom = dynamic_cast<CFanFlatProjectionGeometry2D*>(m_pSinogram->getGeometry());
- const CFanFlatVecProjectionGeometry2D* fanVecProjGeom = dynamic_cast<CFanFlatVecProjectionGeometry2D*>(m_pSinogram->getGeometry());
-
- if (parProjGeom) {
-
- float *offsets, *angles, detSize, outputScale;
-
- ok = convertAstraGeometry(&volgeom, parProjGeom, offsets, angles, detSize, outputScale);
-
- dims.iProjAngles = parProjGeom->getProjectionAngleCount();
- dims.iProjDets = parProjGeom->getDetectorCount();
- dims.fDetScale = parProjGeom->getDetectorWidth() / fPixelSize;
-
- ok = m_pAlgo->setGeometry(dims, parProjGeom->getProjectionAngles());
- ok &= m_pAlgo->setTOffsets(offsets);
-
- // CHECKME: outputScale? detSize?
-
- delete[] offsets;
- delete[] angles;
-
- } else if (fanProjGeom || fanVecProjGeom) {
-
- astraCUDA::SFanProjection* projs;
- float outputScale;
-
- if (fanProjGeom) {
- ok = convertAstraGeometry(&volgeom, fanProjGeom, projs, outputScale);
- } else {
- ok = convertAstraGeometry(&volgeom, fanVecProjGeom, projs, outputScale);
- }
-
- dims.iProjAngles = m_pSinogram->getGeometry()->getProjectionAngleCount();
- dims.iProjDets = m_pSinogram->getGeometry()->getDetectorCount();
- dims.fDetScale = m_pSinogram->getGeometry()->getDetectorWidth() / fPixelSize;
-
- ok = m_pAlgo->setFanGeometry(dims, projs);
-
- // CHECKME: outputScale?
-
- delete[] projs;
-
- } else {
-
- ASTRA_ASSERT(false);
-
- }
+ ok = m_pAlgo->setGeometry(&volgeom, &projgeom);
if (!ok) return false;
+ ok = m_pAlgo->setSuperSampling(m_iDetectorSuperSampling, m_iPixelSuperSampling);
+ if (!ok) return false;
if (m_bUseReconstructionMask)
ok &= m_pAlgo->enableVolumeMask();
diff --git a/src/FanFlatBeamLineKernelProjector2D.cpp b/src/FanFlatBeamLineKernelProjector2D.cpp
index 4bfff58..7bec351 100644
--- a/src/FanFlatBeamLineKernelProjector2D.cpp
+++ b/src/FanFlatBeamLineKernelProjector2D.cpp
@@ -91,7 +91,7 @@ bool CFanFlatBeamLineKernelProjector2D::_check()
ASTRA_CONFIG_CHECK(dynamic_cast<CFanFlatProjectionGeometry2D*>(m_pProjectionGeometry) || dynamic_cast<CFanFlatVecProjectionGeometry2D*>(m_pProjectionGeometry), "FanFlatBeamLineKernelProjector2D", "Unsupported projection geometry");
- ASTRA_CONFIG_CHECK(m_pVolumeGeometry->getPixelLengthX() == m_pVolumeGeometry->getPixelLengthY(), "FanFlatBeamLineKernelProjector2D", "Pixel height must equal pixel width.");
+ ASTRA_CONFIG_CHECK(abs(m_pVolumeGeometry->getPixelLengthX() / m_pVolumeGeometry->getPixelLengthY()) - 1 < eps, "FanFlatBeamLineKernelProjector2D", "Pixel height must equal pixel width.");
// success
return true;
diff --git a/src/FanFlatBeamStripKernelProjector2D.cpp b/src/FanFlatBeamStripKernelProjector2D.cpp
index 198c0ea..de12d49 100644
--- a/src/FanFlatBeamStripKernelProjector2D.cpp
+++ b/src/FanFlatBeamStripKernelProjector2D.cpp
@@ -89,7 +89,7 @@ bool CFanFlatBeamStripKernelProjector2D::_check()
ASTRA_CONFIG_CHECK(dynamic_cast<CFanFlatProjectionGeometry2D*>(m_pProjectionGeometry), "FanFlatBeamLineKernelProjector2D", "Unsupported projection geometry");
- ASTRA_CONFIG_CHECK(m_pVolumeGeometry->getPixelLengthX() == m_pVolumeGeometry->getPixelLengthY(), "FanFlatBeamStripKernelProjector2D", "Pixel height must equal pixel width.");
+ ASTRA_CONFIG_CHECK(abs(m_pVolumeGeometry->getPixelLengthX() / m_pVolumeGeometry->getPixelLengthY()) - 1 < eps, "FanFlatBeamStripKernelProjector2D", "Pixel height must equal pixel width.");
// success
return true;
diff --git a/src/FanFlatProjectionGeometry2D.cpp b/src/FanFlatProjectionGeometry2D.cpp
index 28bc75e..697550c 100644
--- a/src/FanFlatProjectionGeometry2D.cpp
+++ b/src/FanFlatProjectionGeometry2D.cpp
@@ -27,6 +27,8 @@ along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
#include "astra/FanFlatProjectionGeometry2D.h"
+#include "astra/GeometryUtil2D.h"
+
#include <cstring>
#include <sstream>
@@ -213,7 +215,21 @@ Config* CFanFlatProjectionGeometry2D::getConfiguration() const
cfg->self.addChildNode("ProjectionAngles", m_pfProjectionAngles, m_iProjectionAngleCount);
return cfg;
}
-//----------------------------------------------------------------------------------------
+//----------------------------------------------------------------------------------------
+CFanFlatVecProjectionGeometry2D* CFanFlatProjectionGeometry2D::toVectorGeometry()
+{
+ SFanProjection* vectors = genFanProjections(m_iProjectionAngleCount,
+ m_iDetectorCount,
+ m_fOriginSourceDistance,
+ m_fOriginDetectorDistance,
+ m_fDetectorWidth,
+ m_pfProjectionAngles);
+
+ CFanFlatVecProjectionGeometry2D* vecGeom = new CFanFlatVecProjectionGeometry2D();
+ vecGeom->initialize(m_iProjectionAngleCount, m_iDetectorCount, vectors);
+ delete[] vectors;
+ return vecGeom;
+}
} // namespace astra
diff --git a/src/Float32Data2D.cpp b/src/Float32Data2D.cpp
index 56ea7cc..c5d2cc8 100644
--- a/src/Float32Data2D.cpp
+++ b/src/Float32Data2D.cpp
@@ -286,7 +286,7 @@ void CFloat32Data2D::_allocateData()
ASTRA_ASSERT(!m_bInitialized);
ASTRA_ASSERT(m_iSize > 0);
- ASTRA_ASSERT(m_iSize == (size_t)m_iWidth * m_iHeight);
+ ASTRA_ASSERT((size_t)m_iSize == (size_t)m_iWidth * m_iHeight);
ASTRA_ASSERT(m_pfData == NULL);
ASTRA_ASSERT(m_ppfData2D == NULL);
diff --git a/src/GeometryUtil2D.cpp b/src/GeometryUtil2D.cpp
new file mode 100644
index 0000000..2ee6185
--- /dev/null
+++ b/src/GeometryUtil2D.cpp
@@ -0,0 +1,175 @@
+/*
+-----------------------------------------------------------------------
+Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+ 2014-2015, CWI, Amsterdam
+
+Contact: astra@uantwerpen.be
+Website: http://sf.net/projects/astra-toolbox
+
+This file is part of the ASTRA Toolbox.
+
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+#include "astra/GeometryUtil2D.h"
+
+#include <cmath>
+
+namespace astra {
+
+SParProjection* genParProjections(unsigned int iProjAngles,
+ unsigned int iProjDets,
+ double fDetSize,
+ const float *pfAngles,
+ const float *pfExtraOffsets)
+{
+ SParProjection base;
+ base.fRayX = 0.0f;
+ base.fRayY = 1.0f;
+
+ base.fDetSX = iProjDets * fDetSize * -0.5f;
+ base.fDetSY = 0.0f;
+
+ base.fDetUX = fDetSize;
+ base.fDetUY = 0.0f;
+
+ SParProjection* p = new SParProjection[iProjAngles];
+
+#define ROTATE0(name,i,alpha) do { p[i].f##name##X = base.f##name##X * cos(alpha) - base.f##name##Y * sin(alpha); p[i].f##name##Y = base.f##name##X * sin(alpha) + base.f##name##Y * cos(alpha); } while(0)
+
+ for (unsigned int i = 0; i < iProjAngles; ++i) {
+ if (pfExtraOffsets) {
+ // TODO
+ }
+
+ ROTATE0(Ray, i, pfAngles[i]);
+ ROTATE0(DetS, i, pfAngles[i]);
+ ROTATE0(DetU, i, pfAngles[i]);
+
+ if (pfExtraOffsets) {
+ float d = pfExtraOffsets[i];
+ p[i].fDetSX -= d * p[i].fDetUX;
+ p[i].fDetSY -= d * p[i].fDetUY;
+ }
+ }
+
+#undef ROTATE0
+
+ return p;
+}
+
+
+SFanProjection* genFanProjections(unsigned int iProjAngles,
+ unsigned int iProjDets,
+ double fOriginSource, double fOriginDetector,
+ double fDetSize,
+ const float *pfAngles)
+// const float *pfExtraOffsets)
+{
+ SFanProjection *pProjs = new SFanProjection[iProjAngles];
+
+ float fSrcX0 = 0.0f;
+ float fSrcY0 = -fOriginSource;
+ float fDetUX0 = fDetSize;
+ float fDetUY0 = 0.0f;
+ float fDetSX0 = iProjDets * fDetUX0 / -2.0f;
+ float fDetSY0 = fOriginDetector;
+
+#define ROTATE0(name,i,alpha) do { pProjs[i].f##name##X = f##name##X0 * cos(alpha) - f##name##Y0 * sin(alpha); pProjs[i].f##name##Y = f##name##X0 * sin(alpha) + f##name##Y0 * cos(alpha); } while(0)
+ for (unsigned int i = 0; i < iProjAngles; ++i) {
+ ROTATE0(Src, i, pfAngles[i]);
+ ROTATE0(DetS, i, pfAngles[i]);
+ ROTATE0(DetU, i, pfAngles[i]);
+ }
+
+#undef ROTATE0
+
+ return pProjs;
+}
+
+// Convert a SParProjection back into its set of "standard" circular parallel
+// beam parameters. This is always possible.
+bool getParParameters(const SParProjection &proj, unsigned int iProjDets, float &fAngle, float &fDetSize, float &fOffset)
+{
+ // Take part of DetU orthogonal to Ray
+ double ux = proj.fDetUX;
+ double uy = proj.fDetUY;
+
+ double t = (ux * proj.fRayX + uy * proj.fRayY) / (proj.fRayX * proj.fRayX + proj.fRayY * proj.fRayY);
+
+ ux -= t * proj.fRayX;
+ uy -= t * proj.fRayY;
+
+ double angle = atan2(uy, ux);
+
+ fAngle = (float)angle;
+
+ double norm2 = uy * uy + ux * ux;
+
+ fDetSize = (float)sqrt(norm2);
+
+ // CHECKME: SIGNS?
+ fOffset = (float)(-0.5*iProjDets - (proj.fDetSY*uy + proj.fDetSX*ux) / norm2);
+
+ return true;
+}
+
+// Convert a SFanProjection back into its set of "standard" circular fan beam
+// parameters. This will return false if it can not be represented in this way.
+bool getFanParameters(const SFanProjection &proj, unsigned int iProjDets, float &fAngle, float &fOriginSource, float &fOriginDetector, float &fDetSize, float &fOffset)
+{
+ // angle
+ // det size
+ // offset
+ // origin-source
+ // origin-detector
+
+ // Need to check if line source-origin is orthogonal to vector ux,uy
+ // (including the case source==origin)
+
+ // (equivalent: source and origin project to same point on detector)
+
+ double dp = proj.fSrcX * proj.fDetUX + proj.fSrcY * proj.fDetUY;
+
+ double rel = (proj.fSrcX*proj.fSrcX + proj.fSrcY*proj.fSrcY) * (proj.fDetUX*proj.fDetUX + proj.fDetUY*proj.fDetUY);
+ rel = sqrt(rel);
+
+ if (std::abs(dp) > rel * 0.0001)
+ return false;
+
+ fOriginSource = sqrt(proj.fSrcX*proj.fSrcX + proj.fSrcY*proj.fSrcY);
+
+ fDetSize = sqrt(proj.fDetUX*proj.fDetUX + proj.fDetUY*proj.fDetUY);
+
+ // project origin on detector line ( == project source on detector line)
+
+ double t = (- proj.fDetSX) * proj.fDetUX + (- proj.fDetSY) * proj.fDetUY;
+
+ fOffset = (float)t - 0.5*iProjDets;
+
+ // TODO: CHECKME
+ fOriginDetector = sqrt((proj.fDetSX + t * proj.fDetUX)*(proj.fDetSX + t * proj.fDetUX) + (proj.fDetSY + t * proj.fDetUY)*(proj.fDetSY + t * proj.fDetUY));
+
+ //float fAngle = atan2(proj.fDetSX + t * proj.fDetUX - proj.fSrcX, proj.fDetSY + t * proj.fDetUY); // TODO: Fix order + sign
+ fAngle = atan2(proj.fDetUY, proj.fDetUX); // TODO: Check order + sign
+
+ return true;
+}
+
+
+}
diff --git a/src/ParallelBeamBlobKernelProjector2D.cpp b/src/ParallelBeamBlobKernelProjector2D.cpp
index 5cc9174..7ff13e9 100644
--- a/src/ParallelBeamBlobKernelProjector2D.cpp
+++ b/src/ParallelBeamBlobKernelProjector2D.cpp
@@ -101,7 +101,7 @@ bool CParallelBeamBlobKernelProjector2D::_check()
// check base class
ASTRA_CONFIG_CHECK(CProjector2D::_check(), "ParallelBeamBlobKernelProjector2D", "Error in Projector2D initialization");
- ASTRA_CONFIG_CHECK(dynamic_cast<CParallelProjectionGeometry2D*>(m_pProjectionGeometry), "ParallelBeamBlobKernelProjector2D", "Unsupported projection geometry");
+ ASTRA_CONFIG_CHECK(dynamic_cast<CParallelProjectionGeometry2D*>(m_pProjectionGeometry) || dynamic_cast<CParallelVecProjectionGeometry2D*>(m_pProjectionGeometry), "ParallelBeamBlobKernelProjector2D", "Unsupported projection geometry");
ASTRA_CONFIG_CHECK(m_iBlobSampleCount > 0, "ParallelBeamBlobKernelProjector2D", "m_iBlobSampleCount should be strictly positive.");
ASTRA_CONFIG_CHECK(m_pfBlobValues, "ParallelBeamBlobKernelProjector2D", "Invalid Volume Geometry Object.");
@@ -154,17 +154,6 @@ bool CParallelBeamBlobKernelProjector2D::initialize(const Config& _cfg)
for (int i = 0; i < m_iBlobSampleCount; i++) {
m_pfBlobValues[i] = values[i];
}
-
- // Required: KernelValues
- node2 = node.getSingleNode("KernelValuesNeg");
- ASTRA_CONFIG_CHECK(node2, "BlobProjector", "No Kernel/KernelValuesNeg tag specified.");
- vector<float32> values2 = node2.getContentNumericalArray();
- ASTRA_CONFIG_CHECK(values2.size() == (unsigned int)m_iBlobSampleCount, "BlobProjector", "Number of specified values doesn't match SampleCount.");
- m_pfBlobValuesNeg = new float32[m_iBlobSampleCount];
- for (int i = 0; i < m_iBlobSampleCount; i++) {
- m_pfBlobValuesNeg[i] = values2[i];
- }
-
}
// success
@@ -227,44 +216,44 @@ void CParallelBeamBlobKernelProjector2D::computeSingleRayWeights(int _iProjectio
// Splat a single point
std::vector<SDetector2D> CParallelBeamBlobKernelProjector2D::projectPoint(int _iRow, int _iCol)
{
- float32 x = m_pVolumeGeometry->pixelColToCenterX(_iCol);
- float32 y = m_pVolumeGeometry->pixelRowToCenterY(_iRow);
-
- std::vector<SDetector2D> res;
- // loop projectors and detectors
- for (int iProjection = 0; iProjection < m_pProjectionGeometry->getProjectionAngleCount(); ++iProjection) {
-
- // get projection angle
- float32 theta = m_pProjectionGeometry->getProjectionAngle(iProjection);
- if (theta >= 7*PIdiv4) theta -= 2*PI;
- bool inverse = false;
- if (theta >= 3*PIdiv4) {
- theta -= PI;
- inverse = true;
- }
-
- // calculate distance from the center of the voxel to the ray though the origin
- float32 t = x * cos(theta) + y * sin(theta);
- if (inverse) t *= -1.0f;
-
- // calculate the offset on the detectorarray (in indices)
- float32 d = m_pProjectionGeometry->detectorOffsetToIndexFloat(t);
- int dmin = (int)ceil(d - m_fBlobSize);
- int dmax = (int)floor(d + m_fBlobSize);
-
- // add affected detectors to the list
- for (int i = dmin; i <= dmax; ++i) {
- if (d >= 0 && d < m_pProjectionGeometry->getDetectorCount()) {
- SDetector2D det;
- det.m_iAngleIndex = iProjection;
- det.m_iDetectorIndex = i;
- det.m_iIndex = iProjection * getProjectionGeometry()->getDetectorCount() + i;
- res.push_back(det);
- }
- }
- }
-
- // return result vector
- return res;
-
+ // float32 x = m_pVolumeGeometry->pixelColToCenterX(_iCol);
+ // float32 y = m_pVolumeGeometry->pixelRowToCenterY(_iRow);
+
+ // std::vector<SDetector2D> res;
+ // // loop projectors and detectors
+ // for (int iProjection = 0; iProjection < m_pProjectionGeometry->getProjectionAngleCount(); ++iProjection) {
+
+ // // get projection angle
+ // float32 theta = m_pProjectionGeometry->getProjectionAngle(iProjection);
+ // if (theta >= 7*PIdiv4) theta -= 2*PI;
+ // bool inverse = false;
+ // if (theta >= 3*PIdiv4) {
+ // theta -= PI;
+ // inverse = true;
+ // }
+
+ // // calculate distance from the center of the voxel to the ray though the origin
+ // float32 t = x * cos(theta) + y * sin(theta);
+ // if (inverse) t *= -1.0f;
+
+ // // calculate the offset on the detectorarray (in indices)
+ // float32 d = m_pProjectionGeometry->detectorOffsetToIndexFloat(t);
+ // int dmin = (int)ceil(d - m_fBlobSize);
+ // int dmax = (int)floor(d + m_fBlobSize);
+
+ // // add affected detectors to the list
+ // for (int i = dmin; i <= dmax; ++i) {
+ // if (d >= 0 && d < m_pProjectionGeometry->getDetectorCount()) {
+ // SDetector2D det;
+ // det.m_iAngleIndex = iProjection;
+ // det.m_iDetectorIndex = i;
+ // det.m_iIndex = iProjection * getProjectionGeometry()->getDetectorCount() + i;
+ // res.push_back(det);
+ // }
+ // }
+ // }
+
+ // // return result vector
+ // return res;
+ return std::vector<SDetector2D>();
}
diff --git a/src/ParallelBeamLineKernelProjector2D.cpp b/src/ParallelBeamLineKernelProjector2D.cpp
index a5f46a7..a7d72d4 100644
--- a/src/ParallelBeamLineKernelProjector2D.cpp
+++ b/src/ParallelBeamLineKernelProjector2D.cpp
@@ -87,9 +87,9 @@ bool CParallelBeamLineKernelProjector2D::_check()
// check base class
ASTRA_CONFIG_CHECK(CProjector2D::_check(), "ParallelBeamLineKernelProjector2D", "Error in Projector2D initialization");
- ASTRA_CONFIG_CHECK(dynamic_cast<CParallelProjectionGeometry2D*>(m_pProjectionGeometry), "ParallelBeamLineKernelProjector2D", "Unsupported projection geometry");
+ ASTRA_CONFIG_CHECK(dynamic_cast<CParallelProjectionGeometry2D*>(m_pProjectionGeometry) || dynamic_cast<CParallelVecProjectionGeometry2D*>(m_pProjectionGeometry), "ParallelBeamLineKernelProjector2D", "Unsupported projection geometry");
- ASTRA_CONFIG_CHECK(m_pVolumeGeometry->getPixelLengthX() == m_pVolumeGeometry->getPixelLengthY(), "ParallelBeamLineKernelProjector2D", "Pixel height must equal pixel width.");
+ ASTRA_CONFIG_CHECK(abs(m_pVolumeGeometry->getPixelLengthX() / m_pVolumeGeometry->getPixelLengthY()) - 1 < eps, "ParallelBeamLineKernelProjector2D", "Pixel height must equal pixel width.");
// success
return true;
@@ -161,61 +161,63 @@ void CParallelBeamLineKernelProjector2D::computeSingleRayWeights(int _iProjectio
// Project Point
std::vector<SDetector2D> CParallelBeamLineKernelProjector2D::projectPoint(int _iRow, int _iCol)
{
- float32 xUL = m_pVolumeGeometry->pixelColToCenterX(_iCol) - m_pVolumeGeometry->getPixelLengthX() * 0.5f;
- float32 yUL = m_pVolumeGeometry->pixelRowToCenterY(_iRow) - m_pVolumeGeometry->getPixelLengthY() * 0.5f;
- float32 xUR = m_pVolumeGeometry->pixelColToCenterX(_iCol) + m_pVolumeGeometry->getPixelLengthX() * 0.5f;
- float32 yUR = m_pVolumeGeometry->pixelRowToCenterY(_iRow) - m_pVolumeGeometry->getPixelLengthY() * 0.5f;
- float32 xLL = m_pVolumeGeometry->pixelColToCenterX(_iCol) - m_pVolumeGeometry->getPixelLengthX() * 0.5f;
- float32 yLL = m_pVolumeGeometry->pixelRowToCenterY(_iRow) + m_pVolumeGeometry->getPixelLengthY() * 0.5f;
- float32 xLR = m_pVolumeGeometry->pixelColToCenterX(_iCol) + m_pVolumeGeometry->getPixelLengthX() * 0.5f;
- float32 yLR = m_pVolumeGeometry->pixelRowToCenterY(_iRow) + m_pVolumeGeometry->getPixelLengthY() * 0.5f;
-
std::vector<SDetector2D> res;
- // loop projectors and detectors
- for (int iProjection = 0; iProjection < m_pProjectionGeometry->getProjectionAngleCount(); ++iProjection) {
-
- // get projection angle
- float32 theta = m_pProjectionGeometry->getProjectionAngle(iProjection);
- if (theta >= 7*PIdiv4) theta -= 2*PI;
- bool inverse = false;
- if (theta >= 3*PIdiv4) {
- theta -= PI;
- inverse = true;
- }
-
- // calculate distance from the center of the voxel to the ray though the origin
- float32 tUL = xUL * cos(theta) + yUL * sin(theta);
- float32 tUR = xUR * cos(theta) + yUR * sin(theta);
- float32 tLL = xLL * cos(theta) + yLL * sin(theta);
- float32 tLR = xLR * cos(theta) + yLR * sin(theta);
- if (inverse) {
- tUL *= -1.0f;
- tUR *= -1.0f;
- tLL *= -1.0f;
- tLR *= -1.0f;
- }
- float32 tMin = min(tUL, min(tUR, min(tLL,tLR)));
- float32 tMax = max(tUL, max(tUR, max(tLL,tLR)));
-
- // calculate the offset on the detectorarray (in indices)
- int dmin = (int)floor(m_pProjectionGeometry->detectorOffsetToIndexFloat(tMin));
- int dmax = (int)ceil(m_pProjectionGeometry->detectorOffsetToIndexFloat(tMax));
-
- // add affected detectors to the list
- for (int i = dmin; i <= dmax; ++i) {
- if (i >= 0 && i < m_pProjectionGeometry->getDetectorCount()) {
- SDetector2D det;
- det.m_iAngleIndex = iProjection;
- det.m_iDetectorIndex = i;
- det.m_iIndex = iProjection * getProjectionGeometry()->getDetectorCount() + i;
- res.push_back(det);
- }
- }
- }
-
- // return result vector
return res;
+ // float32 xUL = m_pVolumeGeometry->pixelColToCenterX(_iCol) - m_pVolumeGeometry->getPixelLengthX() * 0.5f;
+ // float32 yUL = m_pVolumeGeometry->pixelRowToCenterY(_iRow) - m_pVolumeGeometry->getPixelLengthY() * 0.5f;
+ // float32 xUR = m_pVolumeGeometry->pixelColToCenterX(_iCol) + m_pVolumeGeometry->getPixelLengthX() * 0.5f;
+ // float32 yUR = m_pVolumeGeometry->pixelRowToCenterY(_iRow) - m_pVolumeGeometry->getPixelLengthY() * 0.5f;
+ // float32 xLL = m_pVolumeGeometry->pixelColToCenterX(_iCol) - m_pVolumeGeometry->getPixelLengthX() * 0.5f;
+ // float32 yLL = m_pVolumeGeometry->pixelRowToCenterY(_iRow) + m_pVolumeGeometry->getPixelLengthY() * 0.5f;
+ // float32 xLR = m_pVolumeGeometry->pixelColToCenterX(_iCol) + m_pVolumeGeometry->getPixelLengthX() * 0.5f;
+ // float32 yLR = m_pVolumeGeometry->pixelRowToCenterY(_iRow) + m_pVolumeGeometry->getPixelLengthY() * 0.5f;
+
+ // std::vector<SDetector2D> res;
+ // // loop projectors and detectors
+ // for (int iProjection = 0; iProjection < m_pProjectionGeometry->getProjectionAngleCount(); ++iProjection) {
+
+ // // get projection angle
+ // float32 theta = m_pProjectionGeometry->getProjectionAngle(iProjection);
+ // if (theta >= 7*PIdiv4) theta -= 2*PI;
+ // bool inverse = false;
+ // if (theta >= 3*PIdiv4) {
+ // theta -= PI;
+ // inverse = true;
+ // }
+
+ // // calculate distance from the center of the voxel to the ray though the origin
+ // float32 tUL = xUL * cos(theta) + yUL * sin(theta);
+ // float32 tUR = xUR * cos(theta) + yUR * sin(theta);
+ // float32 tLL = xLL * cos(theta) + yLL * sin(theta);
+ // float32 tLR = xLR * cos(theta) + yLR * sin(theta);
+ // if (inverse) {
+ // tUL *= -1.0f;
+ // tUR *= -1.0f;
+ // tLL *= -1.0f;
+ // tLR *= -1.0f;
+ // }
+ // float32 tMin = min(tUL, min(tUR, min(tLL,tLR)));
+ // float32 tMax = max(tUL, max(tUR, max(tLL,tLR)));
+
+ // // calculate the offset on the detectorarray (in indices)
+ // int dmin = (int)floor(m_pProjectionGeometry->detectorOffsetToIndexFloat(tMin));
+ // int dmax = (int)ceil(m_pProjectionGeometry->detectorOffsetToIndexFloat(tMax));
+
+ // // add affected detectors to the list
+ // for (int i = dmin; i <= dmax; ++i) {
+ // if (i >= 0 && i < m_pProjectionGeometry->getDetectorCount()) {
+ // SDetector2D det;
+ // det.m_iAngleIndex = iProjection;
+ // det.m_iDetectorIndex = i;
+ // det.m_iIndex = iProjection * getProjectionGeometry()->getDetectorCount() + i;
+ // res.push_back(det);
+ // }
+ // }
+ // }
+
+ // // return result vector
+ // return res;
}
//----------------------------------------------------------------------------------------
diff --git a/src/ParallelBeamLinearKernelProjector2D.cpp b/src/ParallelBeamLinearKernelProjector2D.cpp
index e9034bf..98946a8 100644
--- a/src/ParallelBeamLinearKernelProjector2D.cpp
+++ b/src/ParallelBeamLinearKernelProjector2D.cpp
@@ -88,10 +88,10 @@ bool CParallelBeamLinearKernelProjector2D::_check()
// check base class
ASTRA_CONFIG_CHECK(CProjector2D::_check(), "ParallelBeamLinearKernelProjector2D", "Error in Projector2D initialization");
- ASTRA_CONFIG_CHECK(dynamic_cast<CParallelProjectionGeometry2D*>(m_pProjectionGeometry), "ParallelBeamLinearKernelProjector2D", "Unsupported projection geometry");
+ ASTRA_CONFIG_CHECK(dynamic_cast<CParallelProjectionGeometry2D*>(m_pProjectionGeometry) || dynamic_cast<CParallelVecProjectionGeometry2D*>(m_pProjectionGeometry), "ParallelBeamLinearKernelProjector2D", "Unsupported projection geometry");
/// TODO: ADD PIXEL H/W LIMITATIONS
- ASTRA_CONFIG_CHECK(m_pVolumeGeometry->getPixelLengthX() == m_pVolumeGeometry->getPixelLengthY(), "ParallelBeamLinearKernelProjector2D", "Pixel height must equal pixel width.");
+ ASTRA_CONFIG_CHECK(abs(m_pVolumeGeometry->getPixelLengthX() / m_pVolumeGeometry->getPixelLengthY()) - 1 < eps, "ParallelBeamLinearKernelProjector2D", "Pixel height must equal pixel width.");
// success
return true;
diff --git a/src/ParallelBeamStripKernelProjector2D.cpp b/src/ParallelBeamStripKernelProjector2D.cpp
index ab4e49e..5a0767b 100644
--- a/src/ParallelBeamStripKernelProjector2D.cpp
+++ b/src/ParallelBeamStripKernelProjector2D.cpp
@@ -87,9 +87,9 @@ bool CParallelBeamStripKernelProjector2D::_check()
// check base class
ASTRA_CONFIG_CHECK(CProjector2D::_check(), "ParallelBeamStripKernelProjector2D", "Error in Projector2D initialization");
- ASTRA_CONFIG_CHECK(dynamic_cast<CParallelProjectionGeometry2D*>(m_pProjectionGeometry), "ParallelBeamStripKernelProjector2D", "Unsupported projection geometry");
+ ASTRA_CONFIG_CHECK(dynamic_cast<CParallelProjectionGeometry2D*>(m_pProjectionGeometry) || dynamic_cast<CParallelVecProjectionGeometry2D*>(m_pProjectionGeometry), "ParallelBeamStripKernelProjector2D", "Unsupported projection geometry");
- ASTRA_CONFIG_CHECK(m_pVolumeGeometry->getPixelLengthX() == m_pVolumeGeometry->getPixelLengthY(), "ParallelBeamStripKernelProjector2D", "Pixel height must equal pixel width.");
+ ASTRA_CONFIG_CHECK(abs(m_pVolumeGeometry->getPixelLengthX() / m_pVolumeGeometry->getPixelLengthY()) - 1 < eps, "ParallelBeamStripKernelProjector2D", "Pixel height must equal pixel width.");
// success
return true;
@@ -163,57 +163,57 @@ void CParallelBeamStripKernelProjector2D::computeSingleRayWeights(int _iProjecti
// Splat a single point
std::vector<SDetector2D> CParallelBeamStripKernelProjector2D::projectPoint(int _iRow, int _iCol)
{
- float32 xUL = m_pVolumeGeometry->pixelColToCenterX(_iCol) - m_pVolumeGeometry->getPixelLengthX() * 0.5f;
- float32 yUL = m_pVolumeGeometry->pixelRowToCenterY(_iRow) - m_pVolumeGeometry->getPixelLengthY() * 0.5f;
- float32 xUR = m_pVolumeGeometry->pixelColToCenterX(_iCol) + m_pVolumeGeometry->getPixelLengthX() * 0.5f;
- float32 yUR = m_pVolumeGeometry->pixelRowToCenterY(_iRow) - m_pVolumeGeometry->getPixelLengthY() * 0.5f;
- float32 xLL = m_pVolumeGeometry->pixelColToCenterX(_iCol) - m_pVolumeGeometry->getPixelLengthX() * 0.5f;
- float32 yLL = m_pVolumeGeometry->pixelRowToCenterY(_iRow) + m_pVolumeGeometry->getPixelLengthY() * 0.5f;
- float32 xLR = m_pVolumeGeometry->pixelColToCenterX(_iCol) + m_pVolumeGeometry->getPixelLengthX() * 0.5f;
- float32 yLR = m_pVolumeGeometry->pixelRowToCenterY(_iRow) + m_pVolumeGeometry->getPixelLengthY() * 0.5f;
+ // float32 xUL = m_pVolumeGeometry->pixelColToCenterX(_iCol) - m_pVolumeGeometry->getPixelLengthX() * 0.5f;
+ // float32 yUL = m_pVolumeGeometry->pixelRowToCenterY(_iRow) - m_pVolumeGeometry->getPixelLengthY() * 0.5f;
+ // float32 xUR = m_pVolumeGeometry->pixelColToCenterX(_iCol) + m_pVolumeGeometry->getPixelLengthX() * 0.5f;
+ // float32 yUR = m_pVolumeGeometry->pixelRowToCenterY(_iRow) - m_pVolumeGeometry->getPixelLengthY() * 0.5f;
+ // float32 xLL = m_pVolumeGeometry->pixelColToCenterX(_iCol) - m_pVolumeGeometry->getPixelLengthX() * 0.5f;
+ // float32 yLL = m_pVolumeGeometry->pixelRowToCenterY(_iRow) + m_pVolumeGeometry->getPixelLengthY() * 0.5f;
+ // float32 xLR = m_pVolumeGeometry->pixelColToCenterX(_iCol) + m_pVolumeGeometry->getPixelLengthX() * 0.5f;
+ // float32 yLR = m_pVolumeGeometry->pixelRowToCenterY(_iRow) + m_pVolumeGeometry->getPixelLengthY() * 0.5f;
std::vector<SDetector2D> res;
- // loop projectors and detectors
- for (int iProjection = 0; iProjection < m_pProjectionGeometry->getProjectionAngleCount(); ++iProjection) {
-
- // get projection angle
- float32 theta = m_pProjectionGeometry->getProjectionAngle(iProjection);
- if (theta >= 7*PIdiv4) theta -= 2*PI;
- bool inverse = false;
- if (theta >= 3*PIdiv4) {
- theta -= PI;
- inverse = true;
- }
-
- // calculate distance from the center of the voxel to the ray though the origin
- float32 tUL = xUL * cos(theta) + yUL * sin(theta);
- float32 tUR = xUR * cos(theta) + yUR * sin(theta);
- float32 tLL = xLL * cos(theta) + yLL * sin(theta);
- float32 tLR = xLR * cos(theta) + yLR * sin(theta);
- if (inverse) {
- tUL *= -1.0f;
- tUR *= -1.0f;
- tLL *= -1.0f;
- tLR *= -1.0f;
- }
- float32 tMin = min(tUL, min(tUR, min(tLL,tLR)));
- float32 tMax = max(tUL, max(tUR, max(tLL,tLR)));
-
- // calculate the offset on the detectorarray (in indices)
- int dmin = (int)floor(m_pProjectionGeometry->detectorOffsetToIndexFloat(tMin));
- int dmax = (int)ceil(m_pProjectionGeometry->detectorOffsetToIndexFloat(tMax));
-
- // add affected detectors to the list
- for (int i = dmin; i <= dmax; ++i) {
- if (i >= 0 && i < m_pProjectionGeometry->getDetectorCount()) {
- SDetector2D det;
- det.m_iAngleIndex = iProjection;
- det.m_iDetectorIndex = i;
- det.m_iIndex = iProjection * getProjectionGeometry()->getDetectorCount() + i;
- res.push_back(det);
- }
- }
- }
+ // // loop projectors and detectors
+ // for (int iProjection = 0; iProjection < m_pProjectionGeometry->getProjectionAngleCount(); ++iProjection) {
+
+ // // get projection angle
+ // float32 theta = m_pProjectionGeometry->getProjectionAngle(iProjection);
+ // if (theta >= 7*PIdiv4) theta -= 2*PI;
+ // bool inverse = false;
+ // if (theta >= 3*PIdiv4) {
+ // theta -= PI;
+ // inverse = true;
+ // }
+
+ // // calculate distance from the center of the voxel to the ray though the origin
+ // float32 tUL = xUL * cos(theta) + yUL * sin(theta);
+ // float32 tUR = xUR * cos(theta) + yUR * sin(theta);
+ // float32 tLL = xLL * cos(theta) + yLL * sin(theta);
+ // float32 tLR = xLR * cos(theta) + yLR * sin(theta);
+ // if (inverse) {
+ // tUL *= -1.0f;
+ // tUR *= -1.0f;
+ // tLL *= -1.0f;
+ // tLR *= -1.0f;
+ // }
+ // float32 tMin = min(tUL, min(tUR, min(tLL,tLR)));
+ // float32 tMax = max(tUL, max(tUR, max(tLL,tLR)));
+
+ // // calculate the offset on the detectorarray (in indices)
+ // int dmin = (int)floor(m_pProjectionGeometry->detectorOffsetToIndexFloat(tMin));
+ // int dmax = (int)ceil(m_pProjectionGeometry->detectorOffsetToIndexFloat(tMax));
+
+ // // add affected detectors to the list
+ // for (int i = dmin; i <= dmax; ++i) {
+ // if (i >= 0 && i < m_pProjectionGeometry->getDetectorCount()) {
+ // SDetector2D det;
+ // det.m_iAngleIndex = iProjection;
+ // det.m_iDetectorIndex = i;
+ // det.m_iIndex = iProjection * getProjectionGeometry()->getDetectorCount() + i;
+ // res.push_back(det);
+ // }
+ // }
+ // }
// return result vector
return res;
diff --git a/src/ParallelProjectionGeometry2D.cpp b/src/ParallelProjectionGeometry2D.cpp
index f73df50..3cc506a 100644
--- a/src/ParallelProjectionGeometry2D.cpp
+++ b/src/ParallelProjectionGeometry2D.cpp
@@ -27,6 +27,8 @@ along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
#include "astra/ParallelProjectionGeometry2D.h"
+#include "astra/GeometryUtil2D.h"
+
#include <cstring>
using namespace std;
@@ -47,15 +49,13 @@ CParallelProjectionGeometry2D::CParallelProjectionGeometry2D() :
CParallelProjectionGeometry2D::CParallelProjectionGeometry2D(int _iProjectionAngleCount,
int _iDetectorCount,
float32 _fDetectorWidth,
- const float32* _pfProjectionAngles,
- const float32* _pfExtraDetectorOffsets)
+ const float32* _pfProjectionAngles)
{
_clear();
initialize(_iProjectionAngleCount,
_iDetectorCount,
_fDetectorWidth,
- _pfProjectionAngles,
- _pfExtraDetectorOffsets);
+ _pfProjectionAngles);
}
//----------------------------------------------------------------------------------------
@@ -65,8 +65,7 @@ CParallelProjectionGeometry2D::CParallelProjectionGeometry2D(const CParallelProj
initialize(_projGeom.m_iProjectionAngleCount,
_projGeom.m_iDetectorCount,
_projGeom.m_fDetectorWidth,
- _projGeom.m_pfProjectionAngles,
- _projGeom.m_pfExtraDetectorOffset);
+ _projGeom.m_pfProjectionAngles);
}
//----------------------------------------------------------------------------------------
@@ -115,14 +114,12 @@ bool CParallelProjectionGeometry2D::initialize(const Config& _cfg)
bool CParallelProjectionGeometry2D::initialize(int _iProjectionAngleCount,
int _iDetectorCount,
float32 _fDetectorWidth,
- const float32* _pfProjectionAngles,
- const float32* _pfExtraDetectorOffsets)
+ const float32* _pfProjectionAngles)
{
_initialize(_iProjectionAngleCount,
_iDetectorCount,
_fDetectorWidth,
- _pfProjectionAngles,
- _pfExtraDetectorOffsets);
+ _pfProjectionAngles);
// success
m_bInitialized = _check();
@@ -178,15 +175,10 @@ Config* CParallelProjectionGeometry2D::getConfiguration() const
cfg->self.addChildNode("DetectorCount", getDetectorCount());
cfg->self.addChildNode("DetectorWidth", getDetectorWidth());
cfg->self.addChildNode("ProjectionAngles", m_pfProjectionAngles, m_iProjectionAngleCount);
- if(m_pfExtraDetectorOffset!=NULL){
- XMLNode opt = cfg->self.addChildNode("Option");
- opt.addAttribute("key","ExtraDetectorOffset");
- opt.setContent(m_pfExtraDetectorOffset, m_iProjectionAngleCount);
- }
return cfg;
}
-//----------------------------------------------------------------------------------------
+//----------------------------------------------------------------------------------------
CVector3D CParallelProjectionGeometry2D::getProjectionDirection(int _iProjectionIndex, int _iDetectorIndex /* = 0 */)
{
CVector3D vOutput;
@@ -200,4 +192,18 @@ CVector3D CParallelProjectionGeometry2D::getProjectionDirection(int _iProjection
return vOutput;
}
+//----------------------------------------------------------------------------------------
+CParallelVecProjectionGeometry2D* CParallelProjectionGeometry2D::toVectorGeometry()
+{
+ SParProjection* vectors = genParProjections(m_iProjectionAngleCount,
+ m_iDetectorCount,
+ m_fDetectorWidth,
+ m_pfProjectionAngles, 0);
+ // TODO: ExtraOffsets?
+ CParallelVecProjectionGeometry2D* vecGeom = new CParallelVecProjectionGeometry2D();
+ vecGeom->initialize(m_iProjectionAngleCount, m_iDetectorCount, vectors);
+ delete[] vectors;
+ return vecGeom;
+}
+
} // end namespace astra
diff --git a/src/ParallelVecProjectionGeometry2D.cpp b/src/ParallelVecProjectionGeometry2D.cpp
new file mode 100644
index 0000000..1503076
--- /dev/null
+++ b/src/ParallelVecProjectionGeometry2D.cpp
@@ -0,0 +1,233 @@
+/*
+-----------------------------------------------------------------------
+Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+ 2014-2015, CWI, Amsterdam
+
+Contact: astra@uantwerpen.be
+Website: http://sf.net/projects/astra-toolbox
+
+This file is part of the ASTRA Toolbox.
+
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+#include "astra/ParallelVecProjectionGeometry2D.h"
+
+#include <cstring>
+#include <sstream>
+#include <boost/lexical_cast.hpp>
+
+using namespace std;
+
+namespace astra
+{
+
+//----------------------------------------------------------------------------------------
+// Default constructor. Sets all variables to zero.
+CParallelVecProjectionGeometry2D::CParallelVecProjectionGeometry2D()
+{
+ _clear();
+ m_pProjectionAngles = 0;
+}
+
+//----------------------------------------------------------------------------------------
+// Constructor.
+CParallelVecProjectionGeometry2D::CParallelVecProjectionGeometry2D(int _iProjectionAngleCount,
+ int _iDetectorCount,
+ const SParProjection* _pProjectionAngles)
+{
+ this->initialize(_iProjectionAngleCount,
+ _iDetectorCount,
+ _pProjectionAngles);
+}
+
+//----------------------------------------------------------------------------------------
+// Copy Constructor
+CParallelVecProjectionGeometry2D::CParallelVecProjectionGeometry2D(const CParallelVecProjectionGeometry2D& _projGeom)
+{
+ _clear();
+ this->initialize(_projGeom.m_iProjectionAngleCount,
+ _projGeom.m_iDetectorCount,
+ _projGeom.m_pProjectionAngles);
+}
+
+//----------------------------------------------------------------------------------------
+// Destructor.
+CParallelVecProjectionGeometry2D::~CParallelVecProjectionGeometry2D()
+{
+ // TODO
+ delete[] m_pProjectionAngles;
+}
+
+
+//----------------------------------------------------------------------------------------
+// Initialization.
+bool CParallelVecProjectionGeometry2D::initialize(int _iProjectionAngleCount,
+ int _iDetectorCount,
+ const SParProjection* _pProjectionAngles)
+{
+ m_iProjectionAngleCount = _iProjectionAngleCount;
+ m_iDetectorCount = _iDetectorCount;
+ m_pProjectionAngles = new SParProjection[m_iProjectionAngleCount];
+ for (int i = 0; i < m_iProjectionAngleCount; ++i)
+ m_pProjectionAngles[i] = _pProjectionAngles[i];
+
+ // TODO: check?
+
+ // success
+ m_bInitialized = _check();
+ return m_bInitialized;
+}
+
+//----------------------------------------------------------------------------------------
+// Initialization with a Config object
+bool CParallelVecProjectionGeometry2D::initialize(const Config& _cfg)
+{
+ ASTRA_ASSERT(_cfg.self);
+ ConfigStackCheck<CProjectionGeometry2D> CC("ParallelVecProjectionGeometry2D", this, _cfg);
+
+ // TODO: Fix up class hierarchy... this class doesn't fit very well.
+ // initialization of parent class
+ //CProjectionGeometry2D::initialize(_cfg);
+
+ // Required: DetectorCount
+ XMLNode node = _cfg.self.getSingleNode("DetectorCount");
+ ASTRA_CONFIG_CHECK(node, "ParallelVecProjectionGeometry2D", "No DetectorRowCount tag specified.");
+ m_iDetectorCount = boost::lexical_cast<int>(node.getContent());
+ CC.markNodeParsed("DetectorCount");
+
+ // Required: Vectors
+ node = _cfg.self.getSingleNode("Vectors");
+ ASTRA_CONFIG_CHECK(node, "ParallelVecProjectionGeometry2D", "No Vectors tag specified.");
+ vector<float32> data = node.getContentNumericalArray();
+ CC.markNodeParsed("Vectors");
+ ASTRA_CONFIG_CHECK(data.size() % 6 == 0, "ParallelVecProjectionGeometry2D", "Vectors doesn't consist of 6-tuples.");
+ m_iProjectionAngleCount = data.size() / 6;
+ m_pProjectionAngles = new SParProjection[m_iProjectionAngleCount];
+
+ for (int i = 0; i < m_iProjectionAngleCount; ++i) {
+ SParProjection& p = m_pProjectionAngles[i];
+ p.fRayX = data[6*i + 0];
+ p.fRayY = data[6*i + 1];
+ p.fDetUX = data[6*i + 4];
+ p.fDetUY = data[6*i + 5];
+
+ // The backend code currently expects the corner of the detector, while
+ // the matlab interface supplies the center
+ p.fDetSX = data[6*i + 2] - 0.5f * m_iDetectorCount * p.fDetUX;
+ p.fDetSY = data[6*i + 3] - 0.5f * m_iDetectorCount * p.fDetUY;
+ }
+
+ // success
+ m_bInitialized = _check();
+ return m_bInitialized;
+}
+
+//----------------------------------------------------------------------------------------
+// Clone
+CProjectionGeometry2D* CParallelVecProjectionGeometry2D::clone()
+{
+ return new CParallelVecProjectionGeometry2D(*this);
+}
+
+//----------------------------------------------------------------------------------------
+// is equal
+bool CParallelVecProjectionGeometry2D::isEqual(CProjectionGeometry2D* _pGeom2) const
+{
+ if (_pGeom2 == NULL) return false;
+
+ // try to cast argument to CParallelVecProjectionGeometry2D
+ CParallelVecProjectionGeometry2D* pGeom2 = dynamic_cast<CParallelVecProjectionGeometry2D*>(_pGeom2);
+ if (pGeom2 == NULL) return false;
+
+ // both objects must be initialized
+ if (!m_bInitialized || !pGeom2->m_bInitialized) return false;
+
+ // check all values
+ if (m_iProjectionAngleCount != pGeom2->m_iProjectionAngleCount) return false;
+ if (m_iDetectorCount != pGeom2->m_iDetectorCount) return false;
+
+ for (int i = 0; i < m_iProjectionAngleCount; ++i) {
+ if (memcmp(&m_pProjectionAngles[i], &pGeom2->m_pProjectionAngles[i], sizeof(m_pProjectionAngles[i])) != 0) return false;
+ }
+
+ return true;
+}
+
+//----------------------------------------------------------------------------------------
+// Is of type
+bool CParallelVecProjectionGeometry2D::isOfType(const std::string& _sType)
+{
+ return (_sType == "parallel_vec");
+}
+
+//----------------------------------------------------------------------------------------
+
+CVector3D CParallelVecProjectionGeometry2D::getProjectionDirection(int _iProjectionIndex, int _iDetectorIndex /* = 0 */)
+{
+ CVector3D vOutput(0.0f, 0.0f, 0.0f);
+
+ // not implemented
+ ASTRA_ASSERT(false);
+
+ return vOutput;
+}
+
+//----------------------------------------------------------------------------------------
+
+void CParallelVecProjectionGeometry2D::getRayParams(int _iRow, int _iColumn, float32& _fT, float32& _fTheta) const
+{
+ // not implemented
+ ASTRA_ASSERT(false);
+}
+
+//----------------------------------------------------------------------------------------
+
+bool CParallelVecProjectionGeometry2D::_check()
+{
+ // TODO
+ return true;
+}
+
+
+//----------------------------------------------------------------------------------------
+// Get the configuration object
+Config* CParallelVecProjectionGeometry2D::getConfiguration() const
+{
+ Config* cfg = new Config();
+ cfg->initialize("ProjectionGeometry2D");
+ cfg->self.addAttribute("type", "parallel_vec");
+ cfg->self.addChildNode("DetectorCount", getDetectorCount());
+ std::string vectors = "";
+ for (int i = 0; i < m_iProjectionAngleCount; ++i) {
+ SParProjection& p = m_pProjectionAngles[i];
+ vectors += boost::lexical_cast<string>(p.fRayX) + ",";
+ vectors += boost::lexical_cast<string>(p.fRayY) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetSX + 0.5f * m_iDetectorCount * p.fDetUX) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetSY + 0.5f * m_iDetectorCount * p.fDetUY) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetUX) + ",";
+ vectors += boost::lexical_cast<string>(p.fDetUY);
+ if (i < m_iProjectionAngleCount-1) vectors += ';';
+ }
+ cfg->self.addChildNode("Vectors", vectors);
+ return cfg;
+}
+//----------------------------------------------------------------------------------------
+
+
+} // namespace astra
diff --git a/src/ProjectionGeometry2D.cpp b/src/ProjectionGeometry2D.cpp
index e9f08ec..54605a7 100644
--- a/src/ProjectionGeometry2D.cpp
+++ b/src/ProjectionGeometry2D.cpp
@@ -44,11 +44,10 @@ CProjectionGeometry2D::CProjectionGeometry2D() : configCheckData(0)
CProjectionGeometry2D::CProjectionGeometry2D(int _iAngleCount,
int _iDetectorCount,
float32 _fDetectorWidth,
- const float32* _pfProjectionAngles,
- const float32* _pfExtraDetectorOffsets) : configCheckData(0)
+ const float32* _pfProjectionAngles) : configCheckData(0)
{
_clear();
- _initialize(_iAngleCount, _iDetectorCount, _fDetectorWidth, _pfProjectionAngles,_pfExtraDetectorOffsets);
+ _initialize(_iAngleCount, _iDetectorCount, _fDetectorWidth, _pfProjectionAngles);
}
//----------------------------------------------------------------------------------------
@@ -69,7 +68,6 @@ void CProjectionGeometry2D::_clear()
m_iDetectorCount = 0;
m_fDetectorWidth = 0.0f;
m_pfProjectionAngles = NULL;
- m_pfExtraDetectorOffset = NULL;
m_bInitialized = false;
}
@@ -82,10 +80,8 @@ void CProjectionGeometry2D::clear()
m_fDetectorWidth = 0.0f;
if (m_bInitialized){
delete[] m_pfProjectionAngles;
- delete[] m_pfExtraDetectorOffset;
}
m_pfProjectionAngles = NULL;
- m_pfExtraDetectorOffset = NULL;
m_bInitialized = false;
}
@@ -144,19 +140,6 @@ bool CProjectionGeometry2D::initialize(const Config& _cfg)
}
CC.markNodeParsed("ProjectionAngles");
- vector<float32> offset = _cfg.self.getOptionNumericalArray("ExtraDetectorOffset");
- m_pfExtraDetectorOffset = new float32[m_iProjectionAngleCount];
- if (offset.size() == (size_t)m_iProjectionAngleCount) {
- for (int i = 0; i < m_iProjectionAngleCount; i++) {
- m_pfExtraDetectorOffset[i] = offset[i];
- }
- } else {
- for (int i = 0; i < m_iProjectionAngleCount; i++) {
- m_pfExtraDetectorOffset[i] = 0.0f;
- }
- }
- CC.markOptionParsed("ExtraDetectorOffset");
-
// some checks
ASTRA_CONFIG_CHECK(m_iDetectorCount > 0, "ProjectionGeometry2D", "DetectorCount should be positive.");
ASTRA_CONFIG_CHECK(m_fDetectorWidth > 0.0f, "ProjectionGeometry2D", "DetectorWidth should be positive.");
@@ -171,8 +154,7 @@ bool CProjectionGeometry2D::initialize(const Config& _cfg)
bool CProjectionGeometry2D::_initialize(int _iProjectionAngleCount,
int _iDetectorCount,
float32 _fDetectorWidth,
- const float32* _pfProjectionAngles,
- const float32* _pfExtraDetectorOffsets)
+ const float32* _pfProjectionAngles)
{
if (m_bInitialized) {
clear();
@@ -183,10 +165,8 @@ bool CProjectionGeometry2D::_initialize(int _iProjectionAngleCount,
m_iDetectorCount = _iDetectorCount;
m_fDetectorWidth = _fDetectorWidth;
m_pfProjectionAngles = new float32[m_iProjectionAngleCount];
- m_pfExtraDetectorOffset = new float32[m_iProjectionAngleCount];
for (int i = 0; i < m_iProjectionAngleCount; i++) {
m_pfProjectionAngles[i] = _pfProjectionAngles[i];
- m_pfExtraDetectorOffset[i] = _pfExtraDetectorOffsets ? _pfExtraDetectorOffsets[i]:0;
}
// Interface class, so don't set m_bInitialized to true
diff --git a/src/Projector2D.cpp b/src/Projector2D.cpp
index 78412e6..ced5b84 100644
--- a/src/Projector2D.cpp
+++ b/src/Projector2D.cpp
@@ -27,6 +27,7 @@ along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
#include "astra/Projector2D.h"
+#include "astra/ParallelVecProjectionGeometry2D.h"
#include "astra/FanFlatProjectionGeometry2D.h"
#include "astra/FanFlatVecProjectionGeometry2D.h"
#include "astra/SparseMatrixProjectionGeometry2D.h"
@@ -130,6 +131,10 @@ bool CProjector2D::initialize(const Config& _cfg)
CFanFlatVecProjectionGeometry2D* pFanFlatVecProjectionGeometry = new CFanFlatVecProjectionGeometry2D();
pFanFlatVecProjectionGeometry->initialize(Config(node));
m_pProjectionGeometry = pFanFlatVecProjectionGeometry;
+ } else if (type == "parallel_vec") {
+ CParallelVecProjectionGeometry2D* pParallelVecProjectionGeometry = new CParallelVecProjectionGeometry2D();
+ pParallelVecProjectionGeometry->initialize(Config(node));
+ m_pProjectionGeometry = pParallelVecProjectionGeometry;
} else {
m_pProjectionGeometry = new CParallelProjectionGeometry2D();
m_pProjectionGeometry->initialize(Config(node));
diff --git a/src/VolumeGeometry2D.cpp b/src/VolumeGeometry2D.cpp
index dd056ae..75d0dfc 100644
--- a/src/VolumeGeometry2D.cpp
+++ b/src/VolumeGeometry2D.cpp
@@ -41,16 +41,16 @@ bool CVolumeGeometry2D::_check()
ASTRA_CONFIG_CHECK(m_fWindowMinX < m_fWindowMaxX, "VolumeGeometry2D", "WindowMinX should be lower than WindowMaxX.");
ASTRA_CONFIG_CHECK(m_fWindowMinY < m_fWindowMaxY, "VolumeGeometry2D", "WindowMinY should be lower than WindowMaxY.");
- ASTRA_CONFIG_CHECK(m_iGridTotCount == (m_iGridColCount * m_iGridRowCount), "VolumeGeometry2D", "Internal configuration error.");
- ASTRA_CONFIG_CHECK(m_fWindowLengthX == (m_fWindowMaxX - m_fWindowMinX), "VolumeGeometry2D", "Internal configuration error.");
- ASTRA_CONFIG_CHECK(m_fWindowLengthY == (m_fWindowMaxY - m_fWindowMinY), "VolumeGeometry2D", "Internal configuration error.");
- ASTRA_CONFIG_CHECK(m_fWindowArea == (m_fWindowLengthX * m_fWindowLengthY), "VolumeGeometry2D", "Internal configuration error.");
- ASTRA_CONFIG_CHECK(m_fPixelLengthX == (m_fWindowLengthX / (float32)m_iGridColCount), "VolumeGeometry2D", "Internal configuration error.");
- ASTRA_CONFIG_CHECK(m_fPixelLengthY == (m_fWindowLengthY / (float32)m_iGridRowCount), "VolumeGeometry2D", "Internal configuration error.");
-
- ASTRA_CONFIG_CHECK(m_fPixelArea == (m_fPixelLengthX * m_fPixelLengthY), "VolumeGeometry2D", "Internal configuration error.");
- ASTRA_CONFIG_CHECK(fabsf(m_fDivPixelLengthX * m_fPixelLengthX - 1.0f) < eps, "VolumeGeometry2D", "Internal configuration error.");
- ASTRA_CONFIG_CHECK(fabsf(m_fDivPixelLengthY * m_fPixelLengthY - 1.0f) < eps, "VolumeGeometry2D", "Internal configuration error.");
+ ASTRA_CONFIG_CHECK(fabsf(m_iGridTotCount - (m_iGridColCount * m_iGridRowCount)) < eps, "VolumeGeometry2D", "Internal configuration error (m_iGridTotCount).");
+ ASTRA_CONFIG_CHECK(fabsf(m_fWindowLengthX - (m_fWindowMaxX - m_fWindowMinX)) < eps, "VolumeGeometry2D", "Internal configuration error (m_fWindowLengthX).");
+ ASTRA_CONFIG_CHECK(fabsf(m_fWindowLengthY - (m_fWindowMaxY - m_fWindowMinY)) < eps, "VolumeGeometry2D", "Internal configuration error (m_fWindowLengthY).");
+ ASTRA_CONFIG_CHECK(fabsf(m_fWindowArea - (m_fWindowLengthX * m_fWindowLengthY)) < eps, "VolumeGeometry2D", "Internal configuration error (m_fWindowArea).");
+ ASTRA_CONFIG_CHECK(fabsf(m_fPixelLengthX - (m_fWindowLengthX / (float32)m_iGridColCount)) < eps, "VolumeGeometry2D", "Internal configuration error (m_fPixelLengthX).");
+ ASTRA_CONFIG_CHECK(fabsf(m_fPixelLengthY - (m_fWindowLengthY / (float32)m_iGridRowCount)) < eps, "VolumeGeometry2D", "Internal configuration error (m_fPixelLengthY).");
+
+ ASTRA_CONFIG_CHECK(fabsf(m_fPixelArea - (m_fPixelLengthX * m_fPixelLengthY)) < eps, "VolumeGeometry2D", "Internal configuration error (m_fPixelArea).");
+ ASTRA_CONFIG_CHECK(fabsf(m_fDivPixelLengthX * m_fPixelLengthX - 1.0f) < eps, "VolumeGeometry2D", "Internal configuration error (m_fDivPixelLengthX).");
+ ASTRA_CONFIG_CHECK(fabsf(m_fDivPixelLengthY * m_fPixelLengthY - 1.0f) < eps, "VolumeGeometry2D", "Internal configuration error (m_fDivPixelLengthY).");
return true;
}