/*
-----------------------------------------------------------------------
Copyright: 2010-2021, imec Vision Lab, University of Antwerp
2014-2021, CWI, Amsterdam
Contact: astra@astra-toolbox.com
Website: http://www.astra-toolbox.com/
This file is part of the ASTRA Toolbox.
The ASTRA Toolbox is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
The ASTRA Toolbox is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with the ASTRA Toolbox. If not, see .
-----------------------------------------------------------------------
*/
#ifndef _INC_ASTRA_SARTALGORITHM
#define _INC_ASTRA_SARTALGORITHM
#include "Globals.h"
#include "Config.h"
#include "Algorithm.h"
#include "ReconstructionAlgorithm2D.h"
#include "Projector2D.h"
#include "Float32ProjectionData2D.h"
#include "Float32VolumeData2D.h"
#include "DataProjector.h"
namespace astra {
/**
* \brief
* This class contains the implementation of the SART (Simultaneous Algebraic Reconstruction Technique) algorithm.
*
* The update step of pixel \f$v_j\f$ for projection \f$phi\f$ and iteration \f$k\f$ is given by:
* \f[
* v_j^{(k+1)} = v_j^{(k)} + \lambda \frac{\sum_{p_i \in P_\phi} \left( \frac{p_i - \sum_{r=1}^{N} w_{ir}v_r^{(k)}} {\sum_{r=1}^{N}w_{ir} } \right)} {\sum_{p_i \in P_\phi}w_{ij}}
* \f]
*
* \par XML Configuration
* \astra_xml_item{ProjectorId, integer, Identifier of a projector as it is stored in the ProjectorManager.}
* \astra_xml_item{ProjectionDataId, integer, Identifier of a projection data object as it is stored in the DataManager.}
* \astra_xml_item{ReconstructionDataId, integer, Identifier of a volume data object as it is stored in the DataManager.}
* \astra_xml_item_option{ReconstructionMaskId, integer, not used, Identifier of a volume data object that acts as a reconstruction mask. 1 = reconstruct on this pixel. 0 = don't reconstruct on this pixel.}
* \astra_xml_item_option{SinogramMaskId, integer, not used, Identifier of a projection data object that acts as a projection mask. 1 = reconstruct using this ray. 0 = don't use this ray while reconstructing.}
* \astra_xml_item_option{UseMinConstraint, bool, false, Use minimum value constraint.}
* \astra_xml_item_option{MinConstraintValue, float, 0, Minimum constraint value.}
* \astra_xml_item_option{UseMaxConstraint, bool, false, Use maximum value constraint.}
* \astra_xml_item_option{MaxConstraintValue, float, 255, Maximum constraint value.}
* \astra_xml_item_option{ProjectionOrder, string, "sequential", the order in which the projections are updated. 'sequential', 'random' or 'custom'}
* \astra_xml_item_option{ProjectionOrderList, vector of float, not used, if ProjectionOrder='custom': use this order.}
* \astra_xml_item_option{Relaxation, float, 1, The relaxation parameter.}
*
* \par MATLAB example
* \astra_code{
* cfg = astra_struct('SART');\n
* cfg.ProjectorId = proj_id;\n
* cfg.ProjectionDataId = sino_id;\n
* cfg.ReconstructionDataId = recon_id;\n
* cfg.option.MaskId = mask_id;\n
* cfg.option.UseMinConstraint = 'yes';\n
* cfg.option.UseMaxConstraint = 'yes';\n
* cfg.option.MaxConstraintValue = 1024;\n
* cfg.option.ProjectionOrder = 'custom';\n
* cfg.option.ProjectionOrderList = randperm(100);\n
* cfg.option.Relaxation = 1.0;\n
* alg_id = astra_mex_algorithm('create'\, cfg);\n
* astra_mex_algorithm('iterate'\, alg_id\, 10);\n
* astra_mex_algorithm('delete'\, alg_id);\n
* }
*/
class _AstraExport CSartAlgorithm : public CReconstructionAlgorithm2D {
protected:
/** Initial clearing. Only to be used by constructors.
*/
virtual void _clear();
/** Check the values of this object. If everything is ok, the object can be set to the initialized state.
* The following statements are then guaranteed to hold:
* - valid projector
* - valid data objects
* - projection order all within range
*/
virtual bool _check();
// temporary data objects
CFloat32ProjectionData2D* m_pTotalRayLength;
CFloat32VolumeData2D* m_pTotalPixelWeight;
CFloat32ProjectionData2D* m_pDiffSinogram;
int m_iIterationCount;
public:
// type of the algorithm, needed to register with CAlgorithmFactory
static std::string type;
/** Default constructor, containing no code.
*/
CSartAlgorithm();
/** Constructor.
*
* @param _pProjector Projector Object.
* @param _pSinogram ProjectionData2D object containing the sinogram data.
* @param _pReconstruction VolumeData2D object for storing the reconstructed volume.
*/
CSartAlgorithm(CProjector2D* _pProjector,
CFloat32ProjectionData2D* _pSinogram,
CFloat32VolumeData2D* _pReconstruction);
/** Constructor.
*
* @param _pProjector Projector Object.
* @param _pSinogram ProjectionData2D object containing the sinogram data.
* @param _pReconstruction VolumeData2D object for storing the reconstructed volume.
* @param _piProjectionOrder array containing a projection order.
* @param _iProjectionCount number of elements in _piProjectionOrder.
*/
CSartAlgorithm(CProjector2D* _pProjector,
CFloat32ProjectionData2D* _pSinogram,
CFloat32VolumeData2D* _pReconstruction,
int* _piProjectionOrder,
int _iProjectionCount);
/** Destructor.
*/
virtual ~CSartAlgorithm();
/** Clear this class.
*/
virtual void clear();
/** Initialize the algorithm with a config object.
*
* @param _cfg Configuration Object
* @return initialization successful?
*/
virtual bool initialize(const Config& _cfg);
/** Initialize class, no optionals, use sequential order.
*
* @param _pProjector Projector Object.
* @param _pSinogram ProjectionData2D object containing the sinogram data.
* @param _pReconstruction VolumeData2D object for storing the reconstructed volume.
* @return initialization successful?
*/
virtual bool initialize(CProjector2D* _pProjector,
CFloat32ProjectionData2D* _pSinogram,
CFloat32VolumeData2D* _pReconstruction);
/** Initialize class, use custom order.
*
* @param _pProjector Projector Object.
* @param _pSinogram ProjectionData2D object containing the sinogram data.
* @param _pReconstruction VolumeData2D object for storing the reconstructed volume.
* @param _piProjectionOrder array containing a projection order.
* @param _iProjectionCount number of elements in _piProjectionOrder.
* @return initialization successful?
*/
virtual bool initialize(CProjector2D* _pProjector,
CFloat32ProjectionData2D* _pSinogram,
CFloat32VolumeData2D* _pReconstruction,
int* _piProjectionOrder,
int _iProjectionCount);
/** Get all information parameters
*
* @return map with all boost::any object
*/
virtual std::map getInformation();
/** Get a single piece of information represented as a boost::any
*
* @param _sIdentifier identifier string to specify which piece of information you want
* @return boost::any object
*/
virtual boost::any getInformation(std::string _sIdentifier);
/** Perform a number of iterations. Each iteration is a forward and backprojection of
* a single projection index.
*
* @param _iNrIterations amount of iterations to perform.
*/
virtual void run(int _iNrIterations = 1);
/** Get a description of the class.
*
* @return description string
*/
virtual std::string description() const;
protected:
//< Order of the projections.
int* m_piProjectionOrder;
//< Number of projections specified in m_piProjectionOrder.
int m_iProjectionCount;
//< Current index in the projection order array.
int m_iCurrentProjection;
//< Relaxation parameter
float m_fLambda;
};
// inline functions
inline std::string CSartAlgorithm::description() const { return CSartAlgorithm::type; };
} // end namespace
#endif