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%--------------------------------------------------------------------------
% This file is part of the ASTRA Toolbox
%
% Copyright: 2010-2018, imec Vision Lab, University of Antwerp
% 2014-2018, CWI, Amsterdam
% License: Open Source under GPLv3
% Contact: astra@astra-toolbox.com
% Website: http://www.astra-toolbox.com/
%--------------------------------------------------------------------------
classdef MaskingGPU < matlab.mixin.Copyable
% Policy class for masking for DART with GPU accelerated code (deprecated).
%----------------------------------------------------------------------
properties (Access=public)
radius = 1; % SETTING: Radius of masking kernel.
conn = 8; % SETTING: Connectivity window. For 2D: 4 or 8. For 3D: 6 or 26.
edge_threshold = 1; % SETTING: Number of pixels in the window that should be different.
gpu_core = 0; % SETTING:
random = 0.1; % SETTING: Percentage of random points. Between 0 and 1.
end
%----------------------------------------------------------------------
methods (Access=public)
%------------------------------------------------------------------
function settings = getsettings(this)
% Returns a structure containing all settings of this object.
% >> settings = DART.masking.getsettings();
settings.radius = this.radius;
settings.conn = this.conn;
settings.edge_threshold = this.edge_threshold;
settings.random = this.random;
end
%------------------------------------------------------------------
function Mask = apply(this, ~, V_in)
% Applies masking.
% >> Mask = DART.segmentation.apply(DART, V_in);
% 2D, one slice
if size(V_in,3) == 1
Mask = this.apply_2D(V_in);
% 3D, slice by slice
elseif this.conn == 4 || this.conn == 8
Mask = zeros(size(V_in));
for slice = 1:size(V_in,3)
Mask(:,:,slice) = this.apply_2D(V_in(:,:,slice));
end
% 3D, full
else
error('Full 3D masking on GPU not implemented.')
end
end
end
%----------------------------------------------------------------------
methods (Access=protected)
%------------------------------------------------------------------
function Mask = apply_2D(this, S)
vol_geom = astra_create_vol_geom(size(S));
data_id = astra_mex_data2d('create', '-vol', vol_geom, S);
mask_id = astra_mex_data2d('create', '-vol', vol_geom, 0);
cfg = astra_struct('DARTMASK_CUDA');
cfg.SegmentationDataId = data_id;
cfg.MaskDataId = mask_id;
cfg.option.GPUindex = this.gpu_core;
%cfg.option.Connectivity = this.conn;
alg_id = astra_mex_algorithm('create',cfg);
astra_mex_algorithm('iterate',alg_id,1);
Mask = astra_mex_data2d('get', mask_id);
astra_mex_algorithm('delete', alg_id);
astra_mex_data2d('delete', data_id, mask_id);
end
end
end
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