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# -----------------------------------------------------------------------
# Copyright: 2010-2018, imec Vision Lab, University of Antwerp
# 2013-2018, CWI, Amsterdam
#
# Contact: astra@astra-toolbox.com
# Website: http://www.astra-toolbox.com/
#
# This file is part of the ASTRA Toolbox.
#
#
# The ASTRA Toolbox is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# The ASTRA Toolbox is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
#
# -----------------------------------------------------------------------
import astra
import numpy as np
vol_geom = astra.create_vol_geom(128, 128, 128)
angles = np.linspace(0, np.pi, 180,False)
proj_geom = astra.create_proj_geom('parallel3d', 1.0, 1.0, 128, 192, angles)
# Create a simple hollow cube phantom
cube = np.zeros((128,128,128))
cube[17:113,17:113,17:113] = 1
cube[33:97,33:97,33:97] = 0
# Create projection data from this
proj_id, proj_data = astra.create_sino3d_gpu(cube, proj_geom, vol_geom)
# Display a single projection image
import pylab
pylab.gray()
pylab.figure(1)
pylab.imshow(proj_data[:,20,:])
# Create a data object for the reconstruction
rec_id = astra.data3d.create('-vol', vol_geom)
# Set up the parameters for a reconstruction algorithm using the GPU
cfg = astra.astra_dict('SIRT3D_CUDA')
cfg['ReconstructionDataId'] = rec_id
cfg['ProjectionDataId'] = proj_id
# Create the algorithm object from the configuration structure
alg_id = astra.algorithm.create(cfg)
# Run 150 iterations of the algorithm
# Note that this requires about 750MB of GPU memory, and has a runtime
# in the order of 10 seconds.
astra.algorithm.run(alg_id, 150)
# Get the result
rec = astra.data3d.get(rec_id)
pylab.figure(2)
pylab.imshow(rec[:,:,65])
pylab.show()
# Clean up. Note that GPU memory is tied up in the algorithm object,
# and main RAM in the data objects.
astra.algorithm.delete(alg_id)
astra.data3d.delete(rec_id)
astra.data3d.delete(proj_id)
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