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/*
-----------------------------------------------------------------------
Copyright: 2010-2018, imec Vision Lab, University of Antwerp
2014-2018, CWI, Amsterdam
Contact: astra@astra-toolbox.com
Website: http://www.astra-toolbox.com/
This file is part of the ASTRA Toolbox.
The ASTRA Toolbox is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
The ASTRA Toolbox is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
-----------------------------------------------------------------------
*/
#include "astra/CudaFDKAlgorithm3D.h"
#include "astra/AstraObjectManager.h"
#include "astra/CudaProjector3D.h"
#include "astra/ConeProjectionGeometry3D.h"
#include "astra/ConeVecProjectionGeometry3D.h"
#include "astra/CompositeGeometryManager.h"
#include "astra/Logging.h"
#include "astra/Filters.h"
#include "astra/cuda/3d/astra3d.h"
#include "astra/cuda/3d/util3d.h"
using namespace std;
using namespace astraCUDA3d;
namespace astra {
// type of the algorithm, needed to register with CAlgorithmFactory
std::string CCudaFDKAlgorithm3D::type = "FDK_CUDA";
//----------------------------------------------------------------------------------------
// Constructor
CCudaFDKAlgorithm3D::CCudaFDKAlgorithm3D()
{
m_bIsInitialized = false;
m_iGPUIndex = -1;
m_iVoxelSuperSampling = 1;
}
//----------------------------------------------------------------------------------------
// Constructor with initialization
CCudaFDKAlgorithm3D::CCudaFDKAlgorithm3D(CProjector3D* _pProjector,
CFloat32ProjectionData3D* _pProjectionData,
CFloat32VolumeData3D* _pReconstruction)
{
_clear();
initialize(_pProjector, _pProjectionData, _pReconstruction);
}
//----------------------------------------------------------------------------------------
// Destructor
CCudaFDKAlgorithm3D::~CCudaFDKAlgorithm3D()
{
CReconstructionAlgorithm3D::_clear();
}
//---------------------------------------------------------------------------------------
// Check
bool CCudaFDKAlgorithm3D::_check()
{
// check base class
ASTRA_CONFIG_CHECK(CReconstructionAlgorithm3D::_check(), "CUDA_FDK", "Error in ReconstructionAlgorithm3D initialization");
const CProjectionGeometry3D* projgeom = m_pSinogram->getGeometry();
ASTRA_CONFIG_CHECK(dynamic_cast<const CConeProjectionGeometry3D*>(projgeom) || dynamic_cast<const CConeVecProjectionGeometry3D*>(projgeom), "CUDA_FDK", "Error setting FDK geometry");
const CVolumeGeometry3D* volgeom = m_pReconstruction->getGeometry();
bool cube = true;
if (abs(volgeom->getPixelLengthX() / volgeom->getPixelLengthY() - 1.0) > 0.00001)
cube = false;
if (abs(volgeom->getPixelLengthX() / volgeom->getPixelLengthZ() - 1.0) > 0.00001)
cube = false;
ASTRA_CONFIG_CHECK(cube, "CUDA_FDK", "Voxels must be cubes for FDK");
return true;
}
//---------------------------------------------------------------------------------------
void CCudaFDKAlgorithm3D::initializeFromProjector()
{
m_iVoxelSuperSampling = 1;
m_iGPUIndex = -1;
CCudaProjector3D* pCudaProjector = dynamic_cast<CCudaProjector3D*>(m_pProjector);
if (!pCudaProjector) {
if (m_pProjector) {
ASTRA_WARN("non-CUDA Projector3D passed to FDK_CUDA");
}
} else {
m_iVoxelSuperSampling = pCudaProjector->getVoxelSuperSampling();
m_iGPUIndex = pCudaProjector->getGPUIndex();
}
}
//---------------------------------------------------------------------------------------
// Initialize - Config
bool CCudaFDKAlgorithm3D::initialize(const Config& _cfg)
{
ASTRA_ASSERT(_cfg.self);
ConfigStackCheck<CAlgorithm> CC("CudaFDKAlgorithm3D", this, _cfg);
// if already initialized, clear first
if (m_bIsInitialized) {
clear();
}
// initialization of parent class
if (!CReconstructionAlgorithm3D::initialize(_cfg)) {
return false;
}
initializeFromProjector();
// Deprecated options
m_iVoxelSuperSampling = (int)_cfg.self.getOptionNumerical("VoxelSuperSampling", m_iVoxelSuperSampling);
m_iGPUIndex = (int)_cfg.self.getOptionNumerical("GPUindex", m_iGPUIndex);
m_iGPUIndex = (int)_cfg.self.getOptionNumerical("GPUIndex", m_iGPUIndex);
CC.markOptionParsed("VoxelSuperSampling");
CC.markOptionParsed("GPUIndex");
if (!_cfg.self.hasOption("GPUIndex"))
CC.markOptionParsed("GPUindex");
// filter
if (_cfg.self.hasOption("FilterSinogramId")){
m_iFilterDataId = (int)_cfg.self.getOptionInt("FilterSinogramId");
const CFloat32ProjectionData2D * pFilterData = dynamic_cast<CFloat32ProjectionData2D*>(CData2DManager::getSingleton().get(m_iFilterDataId));
if (!pFilterData){
ASTRA_ERROR("Incorrect FilterSinogramId");
return false;
}
const CProjectionGeometry3D* projgeom = m_pSinogram->getGeometry();
const CProjectionGeometry2D* filtgeom = pFilterData->getGeometry();
int iPaddedDetCount = calcNextPowerOfTwo(2 * projgeom->getDetectorColCount());
int iHalfFFTSize = calcFFTFourierSize(iPaddedDetCount);
if(filtgeom->getDetectorCount()!=iHalfFFTSize || filtgeom->getProjectionAngleCount()!=projgeom->getProjectionCount()){
ASTRA_ERROR("Filter size does not match required size (%i angles, %i detectors)",projgeom->getProjectionCount(),iHalfFFTSize);
return false;
}
}else
{
m_iFilterDataId = -1;
}
CC.markOptionParsed("FilterSinogramId");
m_bShortScan = _cfg.self.getOptionBool("ShortScan", false);
CC.markOptionParsed("ShortScan");
// success
m_bIsInitialized = _check();
return m_bIsInitialized;
}
//----------------------------------------------------------------------------------------
// Initialize - C++
bool CCudaFDKAlgorithm3D::initialize(CProjector3D* _pProjector,
CFloat32ProjectionData3D* _pSinogram,
CFloat32VolumeData3D* _pReconstruction)
{
// if already initialized, clear first
if (m_bIsInitialized) {
clear();
}
// required classes
m_pProjector = _pProjector;
m_pSinogram = _pSinogram;
m_pReconstruction = _pReconstruction;
// success
m_bIsInitialized = _check();
return m_bIsInitialized;
}
//---------------------------------------------------------------------------------------
// Information - All
map<string,boost::any> CCudaFDKAlgorithm3D::getInformation()
{
map<string, boost::any> res;
return mergeMap<string,boost::any>(CAlgorithm::getInformation(), res);
};
//---------------------------------------------------------------------------------------
// Information - Specific
boost::any CCudaFDKAlgorithm3D::getInformation(std::string _sIdentifier)
{
return CAlgorithm::getInformation(_sIdentifier);
};
//----------------------------------------------------------------------------------------
// Iterate
void CCudaFDKAlgorithm3D::run(int _iNrIterations)
{
// check initialized
ASTRA_ASSERT(m_bIsInitialized);
CFloat32ProjectionData3D* pSinoMem = dynamic_cast<CFloat32ProjectionData3D*>(m_pSinogram);
ASTRA_ASSERT(pSinoMem);
CFloat32VolumeData3D* pReconMem = dynamic_cast<CFloat32VolumeData3D*>(m_pReconstruction);
ASTRA_ASSERT(pReconMem);
const float *filter = NULL;
if (m_iFilterDataId != -1) {
const CFloat32ProjectionData2D *pFilterData = dynamic_cast<CFloat32ProjectionData2D*>(CData2DManager::getSingleton().get(m_iFilterDataId));
if (pFilterData)
filter = pFilterData->getDataConst();
}
#if 0
bool ok = true;
ok = astraCudaFDK(pReconMem->getData(), pSinoMem->getDataConst(),
&volgeom, conegeom,
m_bShortScan, m_iGPUIndex, m_iVoxelSuperSampling, filter);
ASTRA_ASSERT(ok);
#endif
CCompositeGeometryManager cgm;
cgm.doFDK(m_pProjector, pReconMem, pSinoMem, m_bShortScan, filter);
}
//----------------------------------------------------------------------------------------
} // namespace astra
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